Sciurus carolinensis (gray squirrel): 124970152
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Entry
124970152 CDS
T08117
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF1 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04120
Ubiquitin mediated proteolysis
ncar04137
Mitophagy - animal
ncar04144
Endocytosis
ncar04340
Hedgehog signaling pathway
ncar04350
TGF-beta signaling pathway
ncar04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124970152
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
124970152
04350 TGF-beta signaling pathway
124970152
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
124970152
04137 Mitophagy - animal
124970152
09144 Cellular community - eukaryotes
04520 Adherens junction
124970152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124970152
04121 Ubiquitin system [BR:
ncar04121
]
124970152
03029 Mitochondrial biogenesis [BR:
ncar03029
]
124970152
Enzymes [BR:
ncar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
124970152
Membrane trafficking [BR:
ncar04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
124970152
Autophagy
Mitophagy
Other mitophagy associated proteins
124970152
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
HECT type E3
124970152
Mitochondrial biogenesis [BR:
ncar03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
124970152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
DUF7350
Motif
Other DBs
NCBI-GeneID:
124970152
NCBI-ProteinID:
XP_047389245
LinkDB
All DBs
Position
18:9202423..9298607
Genome browser
AA seq
731 aa
AA seq
DB search
MSNPGTRRNGSSIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDP
KWNQHYDLYVGKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCK
LNPSDTDAVRGQIVVSLQTRDRIGTGGSVVDCRGLLENEGTVYEDSGPGRPLSCFMEEPA
PYSDGTGAAAGGGNCRFAESPSQDQRLQAQRLRNPEVRGSLQTPQNRPHGHQSPELPEGY
EQRTTVQGQVYFLHTQTGVSTWHDPRIPRDLNSVNCDELGPLPPGWEVRSTVSGRIYFVD
HNNRTTQFTDPRLHHIMNHQCQLKEPSQPLPLPSEGSVEDEELPAQRYERDLVQKLKVLR
HELSLQQPQAGHCRIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLDYGGVARE
WLYLLCHEMLNPYYGLFQYSTDNIYMLQINPDSSINPDHLSYFHFVGRIMGLAVFHGHYI
NGGFTVPFYKQLLGKPIQLSDLESVDPELHKSLVWILENDITPVLDHTFCVEHNAFGRIL
QHELKPNGRNVPVTEENKKEYVRLYVNWRFMRGIEAQFLALQKGFNELIPQHLLKPFDQK
ELELIIGGLDKIDLNDWKSNTRLKHCVADSNIVRWFWQAVETFDEDRRARLLQFVTGSTR
VPLQGFKALQGSTGAAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLT
AVEETCGFAVE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaccccgggacgcgcaggaacggctccagcatcaagatccgtctgacagtatta
tgtgccaagaaccttgcaaagaaagacttcttcagactccctgacccttttgctaagatt
gttgtggacggctctgggcagtgccactcaactgacactgtgaaaaacacattggaccca
aaatggaaccagcactatgatctatatgttgggaaaactgattctataaccatcagcgta
tggaaccacaagaaaatacacaagaaacagggagctggcttcctgggttgtgtgcggctg
ctctccaatgccatcagcagattaaaagataccggctaccagcgtttggatctatgcaaa
ctaaatccctcagatactgatgcagttcgtggccaaatagtggtcagtttacagacgcga
gacagaataggcactggagggtcggtggtggactgcaggggactgttagaaaatgaagga
acggtgtatgaagactcgggacccgggaggccgctcagctgcttcatggaggagccggcc
ccctactcagatggtactggtgctgccgcaggtggagggaactgcaggtttgcagagtcc
ccaagtcaagatcaaaggcttcaagctcaacggcttagaaatccggaggtccgaggttca
ctacagacgccccagaaccgaccacatggccaccagtcaccagaactgccggaaggctat
gaacagagaacgacagtacaagggcaagtttactttttgcacacacagactggagttagc
acgtggcatgacccccggatacccagagaccttaacagtgtgaattgtgatgaactcgga
ccactgccaccaggttgggaagtcagaagtacagtttctgggagaatatattttgtagat
cataataaccgaacaacccagtttacagatccaaggttacaccacatcatgaatcaccag
tgccaactaaaggagcccagccagccgctgccgctgcccagtgaaggctccgtggaggac
gaggagcttcctgcccagagatatgaaagagatttagtccagaaactcaaagtcctcaga
cacgagctgtcacttcagcaaccccaagctggtcattgccgaattgaagtttccagagaa
gaaatatttgaggagtcctatcgtcagatcatgaagatgcgcccaaaggacctgaaaaag
cgactcatggtgaagttccgcggggaggagggcttggactacggtggagtggcacgggag
tggctttatttgttgtgccatgaaatgttgaatccatattatggactcttccagtattca
acggacaatatttacatgttacaaatcaacccagattcttcaatcaaccctgaccatctg
tcctatttccactttgtgggtcggatcatgggtctggctgtgttccatggacactacata
aatgggggtttcacagttcccttctacaagcagcttctggggaaacccatccaactctct
gatctggaatcagtggacccagaacttcacaagagcttggtgtggatcctagagaatgac
atcacccctgtgctggatcataccttctgcgtagagcataatgcttttgggcggattctt
cagcatgaactgaaacccaatggcagaaatgtgcctgtcacagaggagaacaagaaggaa
tatgtccggttgtacgtaaactggaggttcatgagaggaatcgaagctcagttcttggcg
ctccagaagggctttaatgaactcatccctcagcacttactgaagcccttcgaccagaag
gagctagagttgataataggaggcctggataagatcgacctgaacgactggaagtccaac
acgcggctgaagcactgtgtggccgacagcaacatcgtcaggtggttctggcaggcggtg
gagacctttgatgaggaccgcagggccaggctgctgcagtttgtgaccggctccacgaga
gtcccgctccagggcttcaaggctctgcaaggttctacaggcgcggcagggccccggctg
ttcaccatccacctgatcgacgcaaacacagacaacctgcccaaggcccacacttgcttt
aaccgaatcgacatcccaccctatgagtcctatgaaaaactctacgagaaactgctgacg
gcggtggaggagacctgcgggtttgccgtggagtga
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