Sciurus carolinensis (gray squirrel): 124970199
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Entry
124970199 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: helicase SRCAP-like
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124970199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncar03036
]
124970199
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
124970199
SWR1 complex
124970199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
124970199
NCBI-ProteinID:
XP_047389325
LinkDB
All DBs
Position
18:complement(19368340..19404727)
Genome browser
AA seq
3221 aa
AA seq
DB search
MQSSPSSAHAQLPILQTQMVSDGMTGSNPVSPASSSSPASSGAGGISPQHIAQDSSLDGP
PGPPDGATVPLEGLSLPQSVDLANKGPKWEKSHAEIAEQAKHEAEIETRIAELRKEGFWS
LKRLPKVPEPPRPKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKE
ERARREEQAKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQT
EKYSDLLSQSLNQPLASSKAGSSPCLGSSSAASSPPPPASRLDDEDGDFQPQEEEEEDDE
ETIEVEEQQEGNDAETQRREIELLRREGELPLEELLRSLPPQLLGGSSSPFQTPSSHDSD
TRDGPEESIEEEPSQVLEVKPPPSSVTQHNKQPWHPDEDDEEFTANEDEAEDEEDTIAAE
EQLEGEVDHAMELSELAREGELSMEELLQQYAGAYASDASAPGSGSSEEDDEDEEVEANS
SDCEPEGVTEAEEAPQEDSSSQSDSPEEQSEDEEDEHSEEEDTSGSSESEESESDESEDA
GSQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSGPPTPGPTTTLGPKKEITDIAAAAE
SLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQ
TISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGW
TKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLL
LTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKV
LRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMSVIN
ILMQLRKVCNHPNLFDPRPVTSPFITPGICFSTASLVLRATDVHPLQRIDMGRFDLIGLE
GRVSRYEADTFLPRHRLSRRVLLEVATAPDPPPRPKPVKMKVNRMLQPVPKQEARTVVVV
NNPRTPLGPVPVRPPPGPEFSAQPPPGPTPPVLPAPLMMSASPAGPPLVPASRPPGPVLL
PPLQPNSGPLPQVLPSPLGVLSGTSRPPTPTLSLKPAPPAPVRLSPVPPPGSSSLLKPLT
VPPGYTFSPAAATTTSTTTATATTTAVPAPTPAPQRLILSPDMQARLPSGEVVSIGQLAS
LAQRPVASAGGSKPLTFQIQGNKLTLTGAQVRQLAVGQPRPLQRNVVHLVSAGGQHHLIS
QPAHVALIQAVAPTPGPTPVSVLPSSTPSTTPAPTGLSLPLAANQVPPSMVNNTGVVKIV
VRQAPRDGLTPVPPLAPAPRPPSSGLQAALTPRSTLSPGRLPTPTLGTARAPIPAPTLVR
PLLKLVHSPSPDVSASAPGAAPMTISSSLHVPSSLPGPASSPMPVPNSSPLVSPVPSTVS
VPLSSSLPISVPTTLPAPASTPLTIPISAPLPVSASGPALLTNVTPTLAPVVSVSPGPPS
LAPAGASPTASALTLGLATTPALSPPQTPGHPLLLAPTSSHVPGLNSSVAPACSPVLVPA
SALANPFSAAPNPAPAQASLLAPAPSASQALATSLAPMVAPQTAILGPPAPLAPLPVLAP
SQTSVPVMASSPTAGAPLVSSSLVPTPPSVLASSSTQTMVPAPVPSPLSSLASTQTLALA
PALASTLGGSSPSQTHSLGTGNLQGPFPAQTLSLTPASSLVPTPAQTLPLAPGTPLGPTQ
TLSLAPASPMGPAPAHTLTLAPATSSASLLAPASVQTLTLSPAPVPVPTLGPAAAQTLAL
APASTQAPASQASSLVVSASGAASLPVSVVNRLPVPKDEPDTLTLRSGPPSPPSTATSFG
GPRPRRQPPPPPRSPFYLESLEEKRKRQRSERLERIFQLSEAHGALAPVYGTEVLDFCTL
PQPVASPIGPRSPGPSHPTFWTYTEAAHRAVLFPQQRLDQLSEIIERFIFVMPPVEAPPP
SLHACHPPPWLAPRQAAFQEQLASELWPRARPLHRIVCNMRTQFPDLRLIQYDCGKLQTL
AALLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNAD
KRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLIS
ERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMPLEEPSGSSVPSAPEE
EEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNENDGFLAGEGEEPGRP
GAEDEEISRAEXEIAALVEQVTDPIERYAMKFLEASLEEVSREELKQAEEQVEAARKDLD
QAKEEVFRLPQEEEEGSGAGDEISCGTGGGSHRRSKKVKAPERPGTXVSVRRLRGARAET
QGANHTPVTSTHHTRSTSTPPRCSPARERVPRPTPRPRPAPASAPAAIPSPVPVXPVPIS
APNPITILPVHILPSPPTPPQIAPSCSPACTPPSACTPPPPHTPPPTQTSLLTPSSPLLL
GSPSVPISPPVTNLSLGLGPEAELRVQALASTESLELAGMTSSNISPLPVVPPKDLLPVS
VELMPVSEKNLPLIPSAPSPTLEADSIPNGQEQGIPASAEGTILTVLPDGEALPSGLRES
NGLELPPSTSDEPLQEKLEADRNLEELVEVQTPTSSPEKPQELGAAEVTAPSTSSSATSS
PEGPSPARPPRRRTSADVEIRGQGAGRSGQPPGPKVLRKLPGRLVTVVEEKELVRRRRQQ
RGTASIQIPGVSETSASPGSPSTRSLSGPESSPPTSGPCEAAPSSSLPTPTQQPFIARRH
IELGMTGGGSPENGEGALLAITPPAVKRRRGRPPKKNRSPADARRGVEEAPSSTSKGTTN
GADPVPGAETLIVAEPVLEPQLTPGPQPLGPQSIHRPEPIILSPVEKRRRGRPPKARDLP
IPGTMSSPGDSNLESRTQPLPLPPPLPPPLPLLACPTATVANTVTTVTISTSPPKRKRGR
PPKNPPSPRPSQLPVLDRDSSSVLESCGLGRRRQAQGLGESEGSSSDEDGSRPLTRLARL
RLEAEGMRGRKSEGSMVVAVIQDDLDLVDSGPGGLELTPPVVSLAPKLRSTRLRPGSLVP
PLETEKVPRKRAGAPIGGGPGLAKRSRLQPPSPLGPEGSVEESEAEASGEEEEGDGTPRR
RPGPRRLVGTTNQGDQRILRSSAPPHLSGPTVSHRGRKAKT
NT seq
9666 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcagcccctcctctgctcatgctcagctcccaatcctacagacacagatggtg
tcggacggcatgacaggcagcaatcctgtgtcccctgcctcatctagttccccagcctct
agtggggcaggcggcatctccccccagcacatagctcaagattcttctctggatggacct
ccaggccccccagatggtgccacagtgcccttggaggggctcagtttaccccagtctgtt
gacctggctaacaagggccccaagtgggaaaagagccatgctgaaattgcagagcaggct
aagcatgaagctgaaattgagactcggattgctgagctgcggaaagaaggtttctggtca
ctgaagaggttgcctaaggtgccagagccccctcgccccaaaggccactgggactatctt
tgtgaggagatgcagtggctctctgctgactttgctcaggagcgccgatggaaacggggt
gtggcccgtaaggtggtgcgcatggtgatccggcaccacgaggagcagcggcagaaagag
gaacgggctcggagggaagagcaggcaaagttgcgccgaattgcttccaccatggccaag
gatgtcagacagttctggagcaacgtggagaaggtggtgcaattcaagcagcagtcccga
cttgaggaaaagcgcaaaaaagccttggacctccacctggacttcattgttggacaaact
gaaaagtattcagatcttctgtctcagagcctcaaccaaccactagcctccagcaaagct
ggctcttccccttgccttggctcttcctcagctgcctccagtcctccaccccctgcctcc
cggctggatgatgaagatggggacttccaaccccaagaggaggaggaggaagatgatgag
gagaccattgaggttgaagaacaacaggaaggcaatgatgcagagacccagaggcgtgag
attgagctgcttcgacgtgagggagaactgccactggaagagctactccgttccctcccc
cctcaactgctgggagggtcttctagcccctttcaaacaccctcctctcatgatagtgac
acacgagatgggcctgaagaaagtattgaagaggaaccttctcaggtgttggaggtgaag
cccccaccttcctctgtcacacagcacaacaaacagccttggcatcctgatgaagatgat
gaagagtttactgctaatgaagatgaagcggaggatgaagaggacactatagccgctgag
gagcagttggaaggggaggtggatcatgccatggagctgagcgagttggctcgagaaggt
gagctgtccatggaggagctattgcagcagtatgcaggagcctatgcctctgatgcctct
gctccaggctctgggagtagtgaagaagatgatgaagatgaggaggttgaggctaacagc
tctgactgtgaaccagagggtgtaacagaagctgaagaagctcctcaagaggatagtagc
agtcagtcagactcccctgaggagcagagtgaggatgaggaagatgagcattcagaggag
gaagacacaagtgggagttcagaatcagaggaatcggaatctgatgagtctgaagatgct
ggatcacagagccaagcagatgaagaagaggaggaagatgatgattttggggttgaatac
ttgcttgcccgtgatgaagagcagagtgaggcagatggaggcagtgggcctcctacccca
gggcccactaccactctaggccctaagaaagaaattactgacattgctgctgcagctgaa
agtctacagcccaagggttacaccttggccaccacccaggtaaagacacctatcccccta
ctcctgcggggccaactccgggagtaccaacatattgggcttgactggctggttactatg
tatgagaagaaacttaatggcattcttgcagatgagatgggactggggaagaccatccag
accatctccttgcttgcccacttggcctgtgaaaaaggtaactgggggccccacttgatc
attgttcctaccagtgtgatgttgaactgggagatggagttgaaacgctggtgccccagc
tttaaaatccttacttactatggagcccagaaagaaaggaagctcaagcggcagggctgg
accaagcccaatgctttccatgtgtgtatcacatcttacaagctggtgctgcaggaccac
caggccttccgccgcaagaactggcgctatcttattctggatgaggctcaaaatatcaag
aacttcaagtcccagcgctggcagtcactgctgaacttcaatagccagaggcgcctactc
cttacaggaactcccttgcagaatagcctcatggagctgtggtccttgatgcactttttg
atgccccatgtcttccagtctcatcgtgaattcaaggaatggttctctaaccccctaact
ggcatgattgagggcagccaagagtataatgaaggtctagtcaaacgcctccacaaggtt
ttacggccttttttgctgcgccgagttaaggtggatgttgagaagcagatgcctaaaaag
tatgagcatgttatccgctgccggctctccaagcgccagcgctgtctctatgatgacttc
atggcacagaccacaactaaggagacactagccacgggccatttcatgagcgtcatcaac
attttgatgcaactgcgaaaagtctgcaatcatccaaatctgtttgacccgcgacctgtt
acctcccccttcatcaccccaggtatctgcttcagcaccgcctctctggtgctaagggcc
actgatgtccacccactccagcggatagatatgggtcgatttgaccttattggcttggag
ggtcgtgtttctcgatatgaggctgatacatttctgccccggcaccgtctctctcgccgg
gtactgctagaagtggccactgctcctgaccctccaccccggcccaagccagtcaagatg
aaggttaacaggatgctgcagccagtgcccaagcaagaagcccgcacagtggtggtggtg
aacaacccacggacaccccttggccctgtcccagtccgaccccctccaggccctgagttc
tcagcccagcctccccctggcccaacccccccagtactgccagcaccactgatgatgtca
gcctcacctgctggacccccgcttgttcctgcatcccgaccccctggacctgttcttttg
cctcccctgcagccaaacagtggtcctctcccccaggttttgccatcccccttgggagtc
ctgagtgggacctcacggcctcccacaccaaccctatccctgaagccggccccacctgcc
ccagttcgcctgagcccagtcccacccccaggctcctccagcctgttgaagccccttaca
gtgccaccaggctacaccttctctcctgctgctgccacaaccacctctaccactacagca
actgctaccaccacagcagtgccggctccaactcctgcaccacagcgcctgatcctgtct
cctgatatgcaggcccgtctgccctcaggtgaagtggtcagcattgggcagttggcttca
ctggcgcaacgtccagtggcaagtgctgggggaagcaaacctctcaccttccaaatccag
ggcaacaagctgactttgactggtgcccaggtgcgccagcttgctgtggggcagccccgc
ccgctgcaaaggaatgtggtgcacctggtgtcagcaggggggcagcaccacctcatcagc
cagcctgcccatgtggccctcatccaggccgtggccccgacccctggccccacccctgtc
tctgtgctgccttcttcgacccccagcaccacccctgcccccactggcctcagccttccg
cttgctgctaaccaggtgccaccatccatggtgaataatacaggcgtggtgaagattgtg
gtgagacaggcccctcgggatggactgactcctgttccaccattggcaccagcacccaga
cctccaagttctgggcttcaagctgcattgactccacgctccactttaagccctggacgg
ctacccacacctactctgggtactgcccgggctcccatacctgcgcccactctggtgagg
ccccttctcaagctggtccacagtccttcgcctgatgtcagtgcttcagcacccggagct
gctcccatgaccatctcttcttctctccatgtgccatcctcactcccagggccagcctct
tctccgatgccagttcccaattcctctccccttgttagtcctgtgccctctacagtctca
gttccactgtcatcttcactccccatctcagtccctaccacgcttcccgccccagcctca
actcccctaaccatccccatctcagcccccttgcctgtttcggcttcaggcccagctctg
ttgaccaatgtgactccaacactggcacctgttgtttcagtgtctcctggacctccctct
ttggcaccagctggggcttccccaactgcatcagccttgactctaggtttggctacaact
ccagccctgtccccacctcagacacctggtcaccctttgttgttggctcccacctcttca
catgttccagggttaaactcatctgtggccccagcatgttcacctgtcctggtaccagct
tcagctctggccaatcccttttcggcagcaccaaatccagctcctgctcaggcttccctt
ctggctccagcaccttctgcatctcaggctttagccacctctctagctcctatggtggct
ccacagacagcaatcctgggtcctccagctcctctggctcctcttccagtactggctcca
tcacagacttcagttccagttatggcttcatcaccaacagcaggagccccgttagtctca
tcctcactggtgcccactccaccttctgtgttggcttcatcatcaactcaaactatggta
ccagctcctgttccatcacctctctcaagcctggcttctacgcagacactggctctagcc
ccagctttagcatccactcttggtggctcgtctccatctcagacacactctttaggaaca
gggaaccttcaggggccctttccagcccagactttgtcattgactccagcatcatccctg
gtacctactccagcccagacactgcctttggcaccaggaacaccattgggtccgactcag
acactgtctctggctccagcttctccgatgggcccggccccagctcacacgctgactttg
gctccagcaacatcatctgcttcactcctggccccagcttcagtgcagacactgactttg
agccctgccccagttcctgtgcccaccctgggtccggctgcagctcagaccctggcactg
gccccagcctcaacacaggccccagcttcccaggcatcttcccttgtggtttcggcatct
ggtgccgcttccctgcctgtctccgtggtaaaccgactgcctgttcccaaggatgagcct
gacacactgacattgcgctctggtccccccagccctccctccactgctacctcgttcggt
ggcccccgacctcgacgccagccccccccaccacctcgttcccctttctatctggagtct
ctggaggaaaagcggaagcggcagaggtctgaacgcctggaacggattttccaacttagt
gaggctcatggggccctggcacctgtgtatgggactgaagtcctggatttctgtaccctg
ccccaacctgttgccagccccatcggccctcgttctcctggccccagccaccccaccttt
tggacttataccgaggctgcccaccgggctgtactgtttccccagcagcgactagaccag
ctgtcagaaatcattgagaggttcatctttgtcatgcctcctgtggaggcacctccccct
tccctgcatgcctgccacccacctccttggctggcccctcgtcaggcagccttccaggaa
caattggcctctgagctctggccccgggctcgtcctttgcaccgtattgtgtgtaacatg
cgcacccagttccccgacttgagactcatccagtatgattgcggaaagttacaaacattg
gcagcactattgcggcagctcaaggcagagggccaccgggtgctcatcttcacccagatg
acccgaatgctggatgttctagagcagtttctcacctaccatggccacctctacttgcgt
ctggatgggtctactagagttgaacagagacaggccttgatggaacggttcaatgcagac
aaacgcatattctgcttcatcctttcgactcgaagtgggggtgtgggcgtgaacctgaca
ggagcagacactgttgttttttatgacagcgactggaatcccaccatggatgctcaggcc
caggatcgctgccatcgaattggccagactcgagatgtccacatttatagacttatcagt
gaacggacagtggaggagaacatcctaaaaaaagcaaatcagaagagaatgttgggagac
atggccattgaaggaggcaacttcaccacagcctattttaaacagcagaccatccgagag
ctgtttgatatgcctctggaggagccatctggctcatctgtgccctctgcccctgaggag
gaagaagagactgtggccagcaagcaaacccatattctggagcaggcattgtgtcgggcc
gaggatgaagaagatatccgtgctgccacccaggccaaggctgaacaagtggctgaactt
gcagaatttaatgagaatgatgggtttcttgctggtgagggagaggagcctggtcggcct
ggggctgaggatgaggagatatccagggctgagncagagattgctgcccttgtagaacag
gttactgaccccattgagcgctatgccatgaaatttctggaggcctcacttgaggaagtg
agccgagaggagcttaagcaagcagaagaacaagtggaagctgcccgcaaagacctggac
caagccaaggaggaggtgtttcgtctaccccaagaagaagaggaggggtcaggggctggg
gatgagatttcctgtgggactggtggaggcagccaccggcgcagtaagaaggtcaaggcc
cctgagaggccagggactnccgtgtcagtgaggcgtcttcgaggagcccgggctgaaact
caaggggcaaaccacactcctgtcacatctacccatcatacccgcagcacctccacacct
ccccgctgcagccctgccagggagcgagttcccaggccaacacctaggcctcgacctgct
ccagcttcagctcctgctgcaattccttccccagtccctgtcnncccagtacccatttca
gcccccaatccaataaccattcttcctgtccatatcttgccttctcccccgactcctcca
cagattgctccctcttgttctcctgcctgtacccctccttctgcctgtacccctccacca
cctcataccccaccacccacccaaacctctctcttaactccttcctctcctctcctgctt
ggttcaccttctgtgcccatctctcccccggtcaccaacctctctttgggattggggcct
gaggcagaactccgtgtacaagcattagcgtctacggagtccctggaactggctggcatg
accagttccaacatctccccgcttcctgttgtgccccctaaggatctattgccagtttct
gttgagctcatgcctgtgtctgagaagaaccttcctctcatcccttctgcacctagccca
accttggaggctgacagcatccccaatggtcaagagcaggggataccagcttctgctgag
gggaccatccttacagtgctgcctgatggtgaggcgttgccctccggtctgagagagagc
aatggactggagctcccaccctcaacatctgatgagccacttcaggagaaactggaggct
gacaggaacttggaagagttggtggaagttcagaccccaacctccagcccagagaagcca
caagaacttggtgcagctgaggtcacagccccatcaacctcatcttcagccacctcctct
cctgagggtccttcacctgcccgaccccctcggcgtcgcaccagtgccgatgtagaaatt
aggggtcagggggctggtcgttcaggacaacctccaggccccaaagtgcttcgcaagctg
ccaggacggctagtaactgtggtggaggaaaaggaacttgtgaggcgaaggcgacagcag
cggggaactgccagcatccaaatacctggggtctctgagactagtgccagcccaggaagt
ccatctacccgcagcttgtcagggccagaatcctcacctcccaccagtgggccctgtgaa
gctgctccctcatcctcgctgcccaccccaactcagcagcccttcatagctcgtcgtcac
attgagctgggaatgactggtgggggcagcccagagaatggagaaggggcactgcttgct
atcactccacctgctgtgaaacgtcgaagggggaggccccccaagaagaacaggtctcca
gcagatgccaggagaggggttgaggaggcaccctcatccacctctaagggaacaaccaat
ggggctgatccagtccctggagctgagaccctaattgttgcagagcctgtcctggagccc
cagcttactcctgggcctcagcctcttggaccccagtcaattcatagaccagagcccatc
atcctgtcacctgtggagaaaagaagacgtgggcggccccctaaggcacgagatttgccc
atccctgggactatgtcctctccaggggacagcaatttagagagtcggacacagccactc
ccactaccaccacccttgccaccacccctaccacttctagcctgtcccactgctactgtc
gccaacactgtcaccactgtcaccatttcaacatccccacccaagcgaaagcggggccga
cctcccaagaatccaccatcgcctcggcccagccagctccctgtcttggaccgtgacagc
tcttctgtccttgagagctgtggattggggagacggcggcaagcccagggcctgggggag
agtgagggcagttcttctgatgaggatggaagccgcccccttacccgcctggcccgcctg
cggcttgaagcagagggaatgcggggacgaaaaagtgaagggtccatggtggtggctgta
attcaggatgatctggatttagtagatagtgggccaggcggattagaattgacacctcct
gtggtttcattagccccaaaactgcgctcaacccggctgcgaccagggtctctagtcccc
ccactagagactgagaaggtgcctcgcaaacgggcgggggccccaattggtgggggtcct
gggctggcaaagcggagccgtctacagcccccaagtcccctggggcctgagggttcagta
gaggagtctgaggctgaagcctcaggtgaggaggaagaaggggatgggaccccacgccgc
cggcctggcccccgcaggcttgttgggaccaccaaccaaggggaccagcgcatcctgcgc
agcagtgcccctccccacctgtctggccctaccgttagtcacagaggccgaaaggccaag
acgtga
DBGET
integrated database retrieval system
