Sciurus carolinensis (gray squirrel): 124970230
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Entry
124970230 CDS
T08117
Name
(RefSeq) inactive rhomboid protein 1 isoform X1
KO
K27588
inactive rhomboid protein
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04668
TNF signaling pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04668 TNF signaling pathway
124970230
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Gene cluster
GFIT
Motif
Pfam:
iRhom1-2_N
Rhomboid
Motif
Other DBs
NCBI-GeneID:
124970230
NCBI-ProteinID:
XP_047389390
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Position
18:41490225..41512074
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AA seq
882 aa
AA seq
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MNGDAVRGFGPWSRLWGLPACLIPPGTMSEGRRDSTSSLQRKKPPWLKLDIPAVMPPAAE
EPSFLQPLKRQTFLRSVSMPAETAHVPSPHHEPRRPVLQRQTSITQTIRRGTADWFGVSK
DSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQLGMQ
KIVDPLARGRAFRMADDSADGPSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRESVAK
MSFRAAAALVKGRSVRDGTLRRAQRRSFTPASFLEEDTADFPDELDTSFFAREGVLHEEL
STCPDEVFESPSEAALKAWEKAPEQADLTGGALDRSELERSHLMLPLERGWRKQKEGGIA
PQPKVRLRQEVVSTVGPRRGQRIAVPVRKLFAREKRPYGLGMVGRLTNRTYRKRIDSYVK
RQIEDMDDHRPFFTYWLTFVHSLVTILAVCIYGIAPVGFSQHETVDSVLRNRGVYENVKY
VQQENFWIGPSSEALIHLGAKFSPCMRQDPQVHSFISAAREREKHSACCVRNDRSGCVQT
SEEECSSTLAVWVKWPVHPSAPDLAGHKRQFGSVCHQDPRVCDEPSSEDPHEWPEDITKW
PICTKNSAGNHTNHPHMDCVITGRPCCVGTKGRCEITSREYCDFMRGYFHEEATLCSQVH
CMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIA
IIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLA
VVLFLFAFGLLPWIDNFAHISGFISGLFLSFAFLPYISFGKFDLYRKRCQIIIFQVVFLG
LLASLVVLFYFYPVRCEWCEFLTCIPFTDKFCEKYELDAQLH
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgaatggggatgccgtcagaggatttggcccctggtccaggctctggggtctaccggcc
tgcctcattccacctggaaccatgagtgagggccgcagggacagcacgagcagtctgcag
cgcaagaagccaccctggctgaagctggacatcccggctgtgatgcccccagcagcagag
gagcccagcttcctgcagcccctgaagcgccagactttcctgcggagtgtgagcatgcca
gccgagacggcccatgtcccttcgccccaccacgagccccggcggccagtgctgcagcgc
cagacgtctatcacacagaccatccgcagggggacagctgactggtttggagtgagcaag
gacagtgacagcacccagaagtggcagcgtaaaagcatccgtcactgcagccagcgctat
gggaagctgaaaccccaggtcatccgagagctggatctgcccagccaggacaatgtgtcg
ctgaccagcacggagacgccacccccgctgtacgtggggccatgccagctgggcatgcag
aagatcgtagacccgctggcccgtggccgggccttccgcatggcagacgactctgctgat
ggcccgagcgccccgcacactccggtcacgcccggtgctgcctccctctgctccttctcc
agctcccgctcaggtttcaaccggcttcctcggcggcgcaagcgtgaatctgtggccaag
atgagcttcagggccgctgcagccctggtgaagggtcgctccgttagggatggcaccttg
cgccgggcacagcggcgaagcttcactcctgccagcttcctggaggaggacacagcagat
ttccctgatgagttagatacgtccttctttgctcgggaaggtgtcctccatgaggagctg
tccacatgcccggatgaagtgtttgagtccccatcagaggcagcactcaaagcctgggag
aaagccccagagcaggccgacctcacgggtggggccctggaccgcagtgagcttgagcgc
agccatttgatgctgcccctggagcgaggctggcggaagcagaaggagggtggcatagcc
ccgcagcccaaggtgcggctccgacaggaggtggtgagcactgtgggacccaggcggggc
caacgcattgcagtgccagtgcgtaagctttttgccagggagaagcgaccgtatgggctg
ggcatggtaggacggctcaccaaccgcacctaccgcaagcgcattgacagctatgtgaag
cgccagattgaggacatggacgaccacaggcccttcttcacctactggcttaccttcgtg
cactcgctggtcaccattctagcagtgtgcatctatggcatcgcacctgtgggtttctcc
cagcatgagacggtggactcggtgctgcggaaccgtggtgtctatgaaaatgtcaagtat
gtgcagcaagaaaacttctggatcggtcccagctcggaggcccttatccacctgggtgcc
aagttctcgccctgcatgcgccaggacccacaggtgcacagcttcatcagcgctgctcga
gagcgtgagaagcactctgcctgttgtgtgcgaaatgaccggtctggctgcgtgcagacc
tcggaggaggagtgctcgtccaccctggcagtgtgggtgaagtggcctgtccatcccagc
gccccagaccttgctggccacaagaggcagtttggctctgtctgccaccaggaccccagg
gtgtgtgatgagccctcctccgaggacccccatgagtggccagaagacatcactaagtgg
ccgatttgcactaaaaacagtgctgggaaccataccaaccaccctcacatggactgtgtc
ataacaggccgaccctgctgtgttggcaccaagggcagatgtgagatcacctcccgggag
tactgtgacttcatgaggggctacttccacgaggaggccacgctctgttctcaggtgcac
tgcatggatgacgtgtgtggcctcctgcctttcctcaaccccgaggtgcccgaccagttc
taccgcctgtggctgtccctgttcctgcacgctgggatcttgcactgcctggtgtccatc
tgcttccagatgactgtgctgcgggacctggagaagctggcgggctggcaccgcatagcc
atcatctacctgctgagcggtgtcacgggcaacttggccagtgccatcttcctgccctac
agggcagaggtgggcccagctggctcgcagttcggcatcctggcctgcctcttcgtggag
ctcttccagagctggcagatcctggcacggccctggcgcgccttcttcaagctgctggct
gtggtcctcttcctctttgccttcgggctgctgccctggatcgacaactttgcccacatc
tcgggcttcatcagcggcctcttcctctccttcgccttcctgccctacatcagcttcggc
aagttcgacctgtaccgcaagcgctgccagatcatcatcttccaggtggtcttcctgggc
ctgctggccagcctggtggtcctcttctacttctatcctgtccgctgtgagtggtgcgag
ttcctcacctgcatccccttcactgacaagttctgtgagaagtacgaactggacgctcag
ctccactga
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