Sciurus carolinensis (gray squirrel): 124970255
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Entry
124970255 CDS
T08117
Name
(RefSeq) trinucleotide repeat-containing gene 18 protein isoform X1
Organism
ncar
Sciurus carolinensis (gray squirrel)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_TNRC18
BAHCC1-like_Tudor
BAH
Tudor_3
DUF4537
Motif
Other DBs
NCBI-GeneID:
124970255
NCBI-ProteinID:
XP_047389442
LinkDB
All DBs
Position
18:complement(12623393..12714947)
Genome browser
AA seq
2947 aa
AA seq
DB search
MDGRDFGPQRSVHGPPPPLLSGLGMDSHRVGAATAGRLPASGLPGPLPPGKYMAGLNLHP
HPGEAFLGSFVASGMGPSASSQGSPVPLPSDLSFRSPTPSNLPMVQLWAAHAHEGFSHLP
SGLYPSYLHLTHLEPPSSGSPLLSQLGQPSIFDTQKDGFYLPAPGPPGALHSHAPSSRTP
SGHSSGTPGKSSREGAAKERRGGEPPPLFGKKDPRAREEAVGPRSVVDLTQEARAEGRQD
RGPPRLAERLSPFLAEAKGKSTLQPSALGMCNGVVDTGLPALVVEAGRSGTKEAARQDES
SRLLRRAEALLPAPRPCPSPLPPPPPKGPPAPPAPAPAGVYTVFREPGREHRVVAPTFVP
SVEAFDERAGPIQIASQARDARGREREVGRPGVLQAPPGSPRPDRPEALREKSSVIRSLK
RPTPADAPPARALRASPDPRAYLSAKELPKPEAEPRPCERAPRGPGATQQAAKLFGLEPA
RQPAPAGPEHKWKPFELGNFATTQMAVLAAQHHHASRAEEDAVAASKKAYLDPGGALPRA
SATCGRPGADLHPSAHAPGEASAMQSLIKYSGSFAREPVTVRPGGCGKKSPFGGLGTMKP
EPAPTSAGASRSQARLPHPGGPAAGGARQLKRDPERPESAKTFGREGSGAQGEAEVRHPP
VGIAVAVARQKDSGGSGRLGPGLADQERSLSLSNVKGHSRADDDSAEDRARHREERLLGG
RLDRDQEKLLRESKELADLARLHPTSCAPNGLNPNLMVTGGPALASSGRWSADPAAHLAT
HPWLPRSGSTSMWLTGHPYGLGPPSLHQGMAPAFPPSLGGSLPSAYQFVRDPQSGQLVVI
PSDHLPHFAELMERAAVPPLWPALYPPGRSPLHHAQQLQLFSQQHFLRQQELLYLQQQAA
QALELQRSAQLLQERLKAQEHRAEMEEKVGKRGLEASGKASLATAGPGLLPRKPPGLSAG
PTGTYGKAMSPPPSPRASPVAALKAKVIQKLEDVSKPPTYAYPATPSSHPSSPPPASPPP
TPALTRKEEAPENVVEKKDLELEKEAPSPFQALFSDIPPRYPFQALPPHYGRPYPFLLQP
TAAADADGLAPDVPLPADGPERLALSPEDKPIRLSPSKIPEPLRETPEEEALADREVKAE
VEDVDEGPAELPALESPLALPVPETMVAASPAGGCGGGLLEAQALSAAGQGCSEASEGSD
FADRAEVQMELPSRTESGAVTLELGGRLTPEPLVETKEEPVEVPLDVPMEVPVAETGPEE
GLAQPTLSEPQPSLELPDCDLPTREGQRPSLEDQEAAPVPGSTCYLEEASSDQFLPGLED
PLAGMNALVAAAELPQARPLPSLGAGVQALEKLEVTQSLALEQSFLQGITLLSEIAELEL
ERRGQEVAGVEPGLAVRPSLESLLAASSHMLKEVLDSPFVDPLKNLRLPRELNPNKKYSW
MQKKEERMYAMKSSLEDMDALELDFRMRLAEVQRQYKEKQRELVKLQRRRDSGDRHEDPH
RSLARRGPGRPRKRTHAPSTLSPPRKRGKSHNSSGKLSNKSLLTSDDYDLGAGIRKRHKG
PEEEHEALIGMGKVRGRNQNWDEHEASSDFMSQLKIKKKKMASDQEQLASKLDKALSLTK
QDKLKSPFKFSDTSGGKSKTSGGCGRFLTPYDSLLGKDRKALAKGLGLSLKSSKEGKHKR
AAKARKMEVGFKARGQSKPAHSPFASEVSSYSYNTDSEEDEDFLRDEWSAQGPSSSKLTS
SLLCGMVAKNSKPAAGPKLTKRGLAAPRTLKPKPAASRKQPFCLLLREAEARSSFSDSSE
DSFDQDESSEEEDEEEELEEEEAGGGYRLGTRERALSPGLEESGLGLLARFAASALPSPT
VGPSLSVVQLEAKQKARKKEERQGLMGTEFEYTDSESEVKVRKPSPAGLLRPKKGLGEPS
PSLAVPPPSARGPGPTSPDKAKLAAEKGRKARKLRGPKEPGFEAGPEASDDDLWTRRRSE
RIFLHDASAAAPAPSTAAPAPKPSRGGKGGAVSPRKDTGRAKDRKDPRKKKKGKEPGSGA
ALPPPRVPALPPEARAPHTGPLAAAKRSKAKAKGKEAKKENRGKGGAVSKLMESMAAEED
FEPNQDSSFSEDEHLPRGGAVERPLTPAPRSCIIDKDELKDGLRVLIPMDDKLLYAGHVQ
TVHSPDIYRVVVEGERGNRPHIYCLEQLLQEAIIDVRPASTRFLPQGTRIAAYWSQQYRC
LYPGTVVRGLLDLEDDGDLITVEFDDGDTGRIPLSHIRLLPPDYKIQCAEPSPALLVPSA
KRRSRKTSKDTGEGKEGATPGSEEPGAKARGRGRKPSTKAKGDRATVLEEGVSTDEVPST
PLTLEPISTPSSKKSPPEPVDKRAKAPKARPAPPQPSPAPPTFASCPAPEPFGELPAPAA
ALTPAPLITMPITMPATRPKPKKARASEESGAKGARRPGEEAELLVKLDHEGVTSPKSKK
AKEALLLREDPGAGGWQEPKSLLGLAGLPPAAGSSEPKMAWPKALEGDLAQEPGPGLPLE
DPGNPKSPDKAQAEQDGAEESETSSSSGSSSSSSSSSSSSGSETEGEEDGEKNGEDSRAG
GRNCSASSSRASSPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSTTDEDSSCSSDDEAAPAPAAGPSTQPALPAKAPKQASKARSSAHSTGKKVPA
AQPPAPPPQPPQPLQPKAQAGAGAKSRPKKREGVHLPTTKELAKRQRLPSVENRPKIAAF
LPARQLWKWFGKPTQRRGMKGKARKLFYKAIVRGKEMIRIGDCAVFLSAGRPNLPYIGRI
QSMWESWGNNMVVRVKWFYHPEETSPGKQFHEGQHWDQKSGRSLPAALRASSQRKDFMER
ALYQSSHVDENDVQTVSHKCLVVGLEQYEQMLKTKRYQDSEGLYYLAGTYEPTTGMIFST
DGVPVLC
NT seq
8844 nt
NT seq
+upstream
nt +downstream
nt
atggatggccgagacttcgggccccagcggtccgtgcacggccccccgccaccgctactg
tccggcttgggcatggacagccaccgcgtgggtgcggccactgccggacgcttgcccgcc
tctggcttgcccggcccgctgccgcccgggaaatacatggccggcctcaacctccacccg
cacccgggcgaggccttcttgggcagctttgtggccagcgggatggggccctcagcctca
tcccaggggagcccggtgcccctgccctctgacctctccttccgctcccccacccccagc
aacctgcccatggtgcagctgtgggctgcccacgcccacgaaggcttctcccacctgccc
agcgggctgtacccatcctacctccacctgacccacctggaaccccccagcagcggcagt
cccctcctcagccagctgggccagcccagcatcttcgatacccagaaagatggcttctac
ctgcccgcgccagggcccccaggagccctgcactctcacgcgccctcctccaggacccct
agtggccactcctcaggcaccccgggcaagtcttcgcgggaaggtgcagccaaggagcgc
cgcggcggggagccgcccccgctgttcggcaagaaggacccacgggcccgcgaagaggcg
gttgggccacgcagtgtggtggacctgacccaggaggcgcgggccgagggccgccaggac
cgtgggcccccgcgcctggccgagcgcctgtcgcccttcctggctgaggccaagggcaag
agcacgctgcagccctcggccctgggcatgtgcaacggcgtggtggacaccgggctgcct
gcactggtggtggaggccggccgcagtggcaccaaggaggcggcccggcaggatgagagc
tcgcggctgctgcggcgcgccgaggccctgctgccggcgccgcgcccctgcccctcgcca
ctgcccccgccgccgcccaaggggccgccggcgcctccagcccctgcgcccgccggcgtc
tataccgtctttcgcgagccgggccgcgagcaccgtgtggtggcacccaccttcgtgcct
tccgtggaggccttcgacgagcgcgcggggcccatccagatcgcgtcgcaggcgcgcgac
gcccggggccgcgagcgcgaggtgggcaggcccggcgtgctgcaggcgccgcccggctct
ccacggcccgaccggccggaggccctgcgcgagaagagctcggtcatccgctctctcaag
cgcccgacgcccgccgatgctccgcccgcccgcgccttgcgcgcttccccggacccacgc
gcctacctgtcggccaaggagctgcccaagcccgaagccgagccgagaccctgcgagcgc
gcgccccgcggccccggggccacgcagcaggccgccaagctctttggcctggagcctgca
aggcaacccgcgcccgcaggccctgagcacaaatggaagccctttgagctgggcaatttc
gccactacgcagatggccgtgctggcggcccaacaccaccatgccagccgcgctgaggag
gatgctgtggctgcctccaagaaagcctatctggatcccggtggcgcgctgccccgagcc
tcggccacctgcggccggcctggtgccgacctgcacccctcggcccacgcaccaggagag
gcctctgccatgcagagccttatcaaatacagtggcagctttgcccgcgagccggtgacc
gtgcgcccaggtggctgtggcaagaagagcccttttggaggcctgggcaccatgaagcct
gagcctgcccccacttctgcgggtgcctcccgctcccaggctcggcttccacaccccggt
ggtcctgcagcgggcggggcccggcaactgaagcgggatcctgagagaccggagagtgcc
aagacctttggtcgggagggctctggtgcccagggggaggctgaagtgcgacacccgccc
gtgggcattgctgtggctgtagcccgacagaaggacagtggcggcagtggccgactgggt
cctgggctggcagaccaggagcgctccctgtctctgagcaatgtcaaagggcacagccgg
gccgacgacgacagtgcggaagaccgagcccggcatcgggaggagcgactgctgggggga
cggctggaccgggaccaggagaagctgcttcgagaaagtaaggagctggccgacctggcc
cgcctgcaccccaccagctgtgctccaaatggcctgaaccccaacctcatggtgaccggg
ggcccagcactggccagctctgggcgttggtctgctgatcctgctgcccacctggccacg
cacccctggctgccccgctcgggcagcacgtccatgtggctcaccggccacccctatggc
ttgggtcccccttctctgcaccagggcatggcacctgcattcccacccagcctggggggt
tctctgccctcagcctaccagtttgtcagggacccccagtcaggacagctggtggtcatc
cctagtgatcacctgcctcactttgcggagctgatggagcgggccgccgtgccgcccctc
tggccagccctgtacccgccgggccgcagccccctgcaccacgcacagcagctgcagctc
ttctcgcagcagcacttcctgcggcagcaagagctcctgtacctgcagcagcaggccgcg
caggcgctggagctgcagaggagcgcccagctgctgcaggagcggctgaaggcccaggag
catcgggcggagatggaggagaaggtgggcaagcggggcctggaggcttcaggcaaggcc
agcctggccactgcaggcccggggctgctgcctcggaagccccccggcctgtctgctggc
cccacgggcacctatggcaaggccatgagtccaccgccgtctccccgtgcctcccccgtg
gctgctctgaaggccaaggtcatccagaagctagaggacgtgtccaagccgcccacctac
gcctaccccgccacgcccagctcccaccccagcagcccaccgcccgcctccccgccaccc
acccctgccctcacccgcaaggaggaggcccctgagaacgtggtggagaagaaggacctg
gagctggagaaggaagcccccagccccttccaggccctgttctcagatatcccacccagg
tacccgttccaagccctgccgccacactacgggaggccctacccgttcctgctgcagccc
acggccgccgccgatgcagacggcctggccccggacgtgccgctcccagctgatgggcct
gagcgcctggcactctcgcctgaagacaaacccatccgcctgtcaccctccaagatccca
gagcccttgcgggagaccccagaggaagaagcactggctgaccgggaggtgaaggcagag
gtggaggatgtggacgagggtcctgctgagctgcccgccctggaatcgccgctggccctg
cccgtgccagaaaccatggtggctgcaagccctgcaggtggctgtggaggtggtctcctg
gaggcccaggcgctgagcgcagctggacagggctgctcagaggcctctgagggctcagac
tttgcagacagggctgaagtgcagatggaattgccaagccggacagaatctggtgcggtc
accctggagcttggggggcggctgacacctgaaccgctggtggagactaaggaggagcca
gtggaggtgcccctggatgtgcctatggaggttcctgtggcggagacggggcctgaggaa
ggcctggcccagccaaccctgagcgagccccagcccagcctggaactgccagattgtgac
ctgcccaccagggaaggacagcgcccgagtctagaggaccaggaggcggcaccagtgcct
ggtagcacctgctacctggaagaggcaagctctgaccagttcctacctggcctggaggac
ccactggctggcatgaacgccctggtggcggctgcggagctgccccaggccaggcctctg
ccctccctgggtgctggagttcaggccttggagaagctggaggtgacccagagcctggcc
ctggaacagagcttcctgcagggcatcacgctgctgagcgagatcgccgagctggagctg
gagcggaggggccaggaggtggcaggggtggagccaggcctggcagtgcggccctccctg
gagagcctgctggctgccagcagccacatgctgaaggaggtcctggacagccccttcgtg
gacccgctcaagaacttgcggcttccgcgggagctgaaccccaacaagaagtatagctgg
atgcagaagaaagaggagcggatgtacgccatgaagtcttccttggaggatatggatgcc
ctggagctggacttccggatgcggctggccgaggtccagcggcagtacaaagagaagcag
cgtgagctggtgaagctccagcgacgccgggactccggggacaggcacgaggatccccat
agaagcttggcacgcagaggccctggcaggccacggaaacggacccacgccccgagcacc
ctgtcgcccccccgcaagagagggaagagccacaacagtagcggaaagctgagcaacaag
tccctgctgacgtcagacgactatgatctgggagcagggatcaggaagaggcacaagggt
cctgaggaggaacacgaggccctcattggaatggggaaagtcagggggaggaaccagaac
tgggatgagcatgaagcttcatctgacttcatgagtcagctaaagatcaagaagaagaag
atggccagcgaccaggagcagctggcaagcaagctagacaaggccctctccctcacaaag
caggacaagctgaagtcacccttcaaattttcggacacttctggggggaaatccaaaact
agtgggggctgcggcaggttcttaactccttatgatagcctgctgggcaaggacaggaag
gcactggccaaaggcctgggcctgtctctgaaatcctccaaagaaggtaaacacaaaagg
gctgccaaagccaggaagatggaggtggggttcaaggccagaggccagtccaagccggcc
cattccccgttcgcctcggaagtgagcagctactcctacaatacggactcagaggaggac
gaagacttcttgagagatgagtggtctgcccaaggcccctccagctccaaactgacctcc
tccctcctgtgcggcatggtggcaaagaacagcaagccagccgcaggccccaagctgacc
aagcggggtctggcggcgccccggactctgaaacccaagccggccgccagcaggaagcag
ccgttctgcttgctgctccgagaggccgaggcccgctcctccttcagcgactcttcggag
gactcgtttgaccaagatgaaagctccgaggaggaggacgaggaggaggagctggaggag
gaggaggctggtggtggctataggctgggcacccgagagcgggccctgtcgccaggcctg
gaggagagtgggctgggcctgctggcccgttttgcggccagcgccctccccagccccacg
gtggggccgtccctgtcggtggtgcagttggaggccaaacagaaggcccggaagaaggag
gagcggcagggcctgatgggcacagagttcgagtacaccgactcggagagtgaggtcaag
gtgcgcaagccgtcgcctgccgggctgctgcggcccaagaagggacttggggagccgagc
ccctccctggccgtgcccccgcccagcgcccgaggcccaggccccaccagcccggacaag
gccaagctggccgcagagaaggggcgcaaggcccgtaagctgcggggccccaaggagccc
ggcttcgaggcggggcctgaggccagcgacgacgacttgtggacccggcgccgcagcgag
cgcatcttcctgcacgacgcctcagccgcagcgcccgcgcccagcaccgcagcgccggcc
cccaagcccagccgcgggggcaagggcggcgccgtgagcccgcgcaaggacaccggccgt
gccaaggacaggaaggaccccaggaagaagaagaaagggaaggagcctgggtcgggagct
gcactgccaccgccccgtgtccccgccctgccccccgaggccagggcccctcacacgggg
cccctggcagctgccaagagaagcaaggccaaagccaaagggaaggaggcaaagaaggag
aaccggggaaaggggggcgccgtgagcaagctaatggagagcatggcagctgaggaggac
tttgaacccaaccaggactcgagcttctcagaggatgagcacctgccacgaggcggggct
gtggagcggccattgacccctgccccgcgctcctgcatcatcgacaaggacgagctgaag
gacggcctgcgcgtgctcatccccatggatgacaagctgctgtacgccgggcacgtgcag
accgtccactcaccggacatataccgcgtggtggtggagggcgagcgcgggaaccggccc
cacatctactgcctggagcagctgctgcaggaggcgatcatcgacgtgaggccggcctcc
actcgcttcctgccccaagggaccaggatcgcagcttactggagccagcagtaccgctgc
ctgtaccccggcactgtggtccgagggttactggacctggaggatgacggggacctcatt
accgtggagtttgatgatggagacacgggcaggatccctctctcacacatccgcctcctg
ccacccgactataagatccagtgtgctgagccatccccagccctcctggtgccgagcgcc
aagcgccgcagccggaagaccagcaaagacaccggggaaggcaaagagggcgccacccca
gggtctgaggaaccaggagccaaggcgcgggggcgtgggcgaaagcccagcaccaaagcc
aagggcgacagagccactgtcctggaggagggggtctccacagatgaggttcccagcacc
cccttgaccctggagcccatcagcaccccaagttccaagaagagccctccagaacctgtg
gacaagcgggccaaggcccccaaggctcgcccggcacctccccagcccagcccagcgcca
cccaccttcgccagctgcccagctcctgagccctttggagagctgccggccccagctgca
gccctgaccccggcccccctcatcaccatgccgatcaccatgcccgccacccgccccaag
cccaagaaggctcgggcctcagaggagtcgggtgccaagggtgctcggaggccaggggag
gaggctgagctgcttgtcaaactggaccatgagggggtcacatcccccaaaagcaagaag
gccaaagaggccctactcctccgggaggacccaggggctggaggctggcaggaacccaag
agcctgctgggcctggctggcctgccccctgcggcaggcagtagcgagcccaagatggcc
tggcccaaggccctggagggggaccttgcccaggagcctgggccagggctgccgttggag
gaccctgggaaccccaagagcccggacaaggcccaggctgagcaggatggggctgaggag
tcagagaccagcagcagcagtggcagcagcagcagcagcagcagtagcagcagcagcagc
ggctcagagacagaaggcgaggaggacggcgagaagaacggggaggacagccgggcaggg
ggccggaactgcagcgcctccagctctagggcatcctcccccgcctcttcctcttcctct
tcctcctcttcttcctcctcctcttcctcctcctcttcctcctcctcttcatcctcctcc
tcctcctcttcctcttcctcttcatcttcgtcctcttcctcctcctcctcctcctcttcc
tcttcctcctcctcctcttcctccaccacagacgaggactcttcctgcagctctgatgat
gaggcagctcctgcccctgcggccggcccctccacccagccggccctccccgctaaggcc
cccaagcaggccagcaaggcacgctcctcggcccactccacgggcaagaaggtgcccgct
gcccagcccccggcccctccaccgcagccccctcagcctctgcaacccaaggctcaggct
ggggcgggggccaagagccgacccaaaaagagagagggcgtccacctgcccactaccaag
gagttggccaagcggcagcgcctgccgtctgtggagaaccggcccaagattgccgccttc
ctgcctgcccggcagctctggaagtggtttgggaaacccacccagcgtcgtggcatgaag
ggcaaggcccgcaagctcttctacaaggccatcgtgcgcggcaaagagatgatccgcatc
ggagactgcgcggtgttcctgtcggccggccgccccaacctgccctacatcggccgcatc
cagagcatgtgggagtcctggggcaacaacatggtggttcgggttaagtggttctaccac
cccgaggagaccagcccgggcaagcagttccacgagggccagcactgggaccagaagtct
ggccgcagccttcctgctgccctgagggcctccagccagaggaaggacttcatggagcgt
gccctgtaccagtcctcacacgtggacgagaacgacgtgcagactgtgtcgcacaagtgc
ctggtggtgggcctggagcagtacgagcagatgctgaagaccaagaggtaccaggacagc
gagggcctgtactacctcgcgggcacctatgagcccaccacgggcatgatcttctccacg
gacggcgtgcccgtgctctgctga
DBGET
integrated database retrieval system
