Sciurus carolinensis (gray squirrel): 124970331
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Entry
124970331 CDS
T08117
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
124970331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124970331
Membrane trafficking [BR:
ncar04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
124970331
Protein recycling
Other Rab GTPase associated proteins
124970331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
CID_GANP
SSTK-IP
Motif
Other DBs
NCBI-GeneID:
124970331
NCBI-ProteinID:
XP_047389564
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All DBs
Position
18:594376..655237
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AA seq
492 aa
AA seq
DB search
MSLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHRARQKQIQEDWELAER
LQREEEEAFASSQSSQGAPSLTFSKFEEKKTNEKTRKVTTVKKFFSASSRVGSKKAEIQE
AKAPSPSINRQTSIETDRVSKEFIEFLKTFHKTGQEIYKQTKIFLEGMHYKRDLSIEEQS
ECTQDFYQNVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQ
KRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITRCSKHIF
NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYVTRFCNPSRLMTGEDGYYFTNL
CCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQEPESWSPDACLGVKQMYKNLDLLSQ
LNERQERIMNEAKKLEKDLIDWTDGIAKEVQDIVEKYPLEIKPQSQPLAAIDSENVENDK
LPPPLQPQVYAG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaaatctgagcgccgaggaatccacgtggaccagtcggagcttctgtgcaag
aagggatgtggctactacggcaaccctgcctggcagggcttctgctccaagtgctggcgg
gaggagtaccacagagcccggcagaagcagatccaggaggactgggagctggctgaacga
cttcagcgggaggaggaagaagcctttgccagcagtcagagcagccagggggccccgtcc
ctcacattttccaaatttgaagaaaagaaaaccaatgagaagactcgcaaggttaccaca
gtgaagaaattcttcagtgcttcttccagagttggatcaaaaaaggcagaaattcaggaa
gcaaaagctcccagtccttccataaaccggcaaaccagcattgaaacagacagagtgtct
aaggagttcatagagtttctcaagaccttccacaagaccggacaagagatctataaacag
accaagatttttttggaaggaatgcattacaaaagggatttgagcatcgaggagcagtca
gagtgtactcaggatttttaccagaatgtggcggaaagaatgcagactcgtggaaaagtg
cctccagaaagagtcgagaagataatggatcagattgagaagtacatcatgacgcgcctc
tacaagtacgtgttctgtccagaaaccactgatgatgagaagaaggacctcgccattcag
aagaggatcagagccctgcactgggtcacacctcagatgctttgtgtccctgtaaacgaa
gaaattccagaagtgtctgacatggtggtgaaagcgatcacagatatcattgagatggac
tcaaagcgtgtgcctcgagataagttggcctgcatcacccggtgcagcaagcacatcttc
aacgccatcaagatcaccaagaacgagcctgcatctgcggacgacttcctgcccacactc
atctacatcgtgctgaagggcaaccccccacgcctgcagtccaacatccagtatgtcacc
cgcttctgcaaccccagccggctgatgacgggggaggatggctactacttcaccaacctg
tgctgtgctgtggctttcattgagaaattagatgcccagtcgttgaatctaagccaggag
gattttgatcgctacatgtccggccagacctctcccagaaagcaagaacccgagagttgg
tctcctgatgcttgcttaggtgtgaagcagatgtataagaacttggatctcctgtctcag
ttgaatgaaagacaggaaagaatcatgaatgaagccaagaaacttgaaaaagacttaatt
gattggacagatggaattgcaaaagaagttcaagacattgtggagaaatacccacttgaa
attaagccccagagccaaccattagcagctatagactctgaaaacgttgaaaatgacaag
cttcctccacccttgcaacctcaggtgtatgcaggatga
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