Sciurus carolinensis (gray squirrel): 124970362
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Entry
124970362 CDS
T08117
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124970362
Enzymes [BR:
ncar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124970362
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124970362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-C3HC4_4
zf-RING_5
ANCHR-like_BBOX
RING_XB3-XBAT31
zf-RING_4
Phytase-like
Motif
Other DBs
NCBI-GeneID:
124970362
NCBI-ProteinID:
XP_047389607
LinkDB
All DBs
Position
18:complement(7459090..7462512)
Genome browser
AA seq
756 aa
AA seq
DB search
MFSQGSSPSLLEALSSDFLACKICLEQLHTPKTLPCLHTYCQDCLAQLAESGHIRCPECR
ETVPVPPAGVAAFKTNFFVNGLLDLVKARACGDLRAGKPACALCPLVGGTSAGGPATARC
LDCADDLCQACADGHRCTRQTHSHRVVDLVGYRAGWYDEEARERQAAQCPQHPGEALRFL
CQPCSQLLCRECRLDPHLDHPCLPLAEAVRARRPGLEELLAGVDSNLVELEATRVAEKEA
LARLREQAARVGTQVEEAAEGVLRALLAQKQEVLGQLRAHVEAAEEAARERLAKLEGREQ
VARVAAAFARRVLSLGREAEILSLEGAIAQRLRQLQSSPWTPGPVPCLLPQLELHPGLLD
KNCHLLQLSFEEEQPQKEKGRGGGGGAQGEEESQRQREEGAKAERQSGGQSQVKDGAPTP
KEDKAKTPREGGSQAPKGDSTQPAQEDGGVQVERGCRSNKKRKFKGRGKSMSREPSPALG
PNLEGSGLLPRPIFSCSFPTRMPGDKRSPRITGLCPFGPREILVADEQNRALKRFSLNGD
YKGTVPVPEGCSPCSVAALQSTVAFSAGARLYLISPDGEVQWRRALSLSQASHAVAALPS
GDRVAVSVAGHVEVYNMEGSLATRFIPGGKANRGQRALVFLTTSPQGNFVGSDWQQNSVV
VCDGLGQVLGEYRGPGLHGCQPGSLSVDKKGYIFLTLREVNKVVILDPKGSLLGDFLTAY
HGLEKPRVTTMVDGRYLVVSLSNGTIHVFRVRSPDN
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgttttcccagggctcctccccgtccctgctggaggccctgagcagcgacttcctggcc
tgcaaaatctgcctggagcagctgcacacacccaagacgctgccctgcctgcacacctac
tgccaggactgcctggcccagctggccgagagcggccacatccgctgtcccgagtgccgg
gagacagtgcccgtgccgcccgcgggggtggccgccttcaagaccaacttcttcgtcaat
gggctcctggacttggtgaaggcccgggcctgcggagacctgcgtgcagggaagccggcc
tgtgccctgtgtcccctggtagggggcaccagtgccggggggccggccacagcccgttgc
ctggactgtgccgatgacttgtgtcaggcctgtgccgacgggcaccgctgcacccgccag
acccacagccaccgcgtagtggacctggtgggctacagggcagggtggtacgacgaggag
gcccgggagcgccaagcagcccagtgtccccagcacccaggggaggctctgcgcttcctg
tgccagccctgctcccagctgctgtgccgcgagtgccgcctggacccccacctggaccac
ccctgcctgcccctggctgaggcagtgcgggcgcggaggccaggcctcgaggagctgctg
gccggcgtggacagcaacctggtggagctggaggccacccgggtggccgaaaaggaggcg
ctggcccggctgcgggagcaggctgcccgggtggggacccaggtggaggaggcagccgag
ggcgtcctcagggccctcctggcccagaagcaggaggtgctggggcagcttcgggcccac
gtggaggctgctgaagaggctgcccgggagaggctggccaagctagaaggccgggagcag
gtggccagggtggcagctgcctttgcgcggcgggtgctcagcctggggcgggaggctgag
atcctttccctggagggcgccattgcccagaggctgcggcagctgcagagcagcccctgg
acacctgggcccgtcccctgcctgctgccccagctggagctccaccctggactgctggac
aagaactgccacctgctccagctctcctttgaggaggagcagccccagaaggagaagggg
agaggaggaggaggaggagcccagggcgaggaggagtcccagaggcagagagaggaggga
gccaaggcagagaggcagagcggaggccagtcccaggttaaggacggagccccgacccca
aaagaggacaaagccaagacaccccgagaaggtggatcccaagcccccaaaggagacagc
acccagccagcccaagaagatggaggcgtccaggtggagaggggttgcagatccaacaag
aagagaaagttcaaaggcaggggcaagtccatgtcccgtgagcccagccccgccctgggg
ccaaacctggagggctcgggcctcctgcccaggcccatcttctcctgcagcttccccacg
cgcatgcctggagacaagcgctctccccgcatcactgggctctgtccttttggcccccga
gaaatcctggtggcagatgagcagaacagggctctgaagcgcttctccctcaacggcgac
tataagggcaccgtgcccgtccccgagggctgctccccatgcagcgtggctgctctgcag
agcacagtggccttctcggccggcgcgcggctctatctcatcagccctgacggcgaggtg
caatggcgccgggccctgagcctctcccaggccagccatgccgtggctgcactgcccagt
ggggaccgggtggccgtcagtgtggcaggccacgtggaggtgtacaacatggaaggcagc
ctggccacccggttcatccccgggggcaaggccaaccggggtcagcgggcgctggtcttc
ctgaccaccagtcctcagggcaatttcgtggggtcagattggcagcagaatagcgtggta
gtctgcgacgggctgggccaggtgcttggggaatatagggggccgggtttgcatggctgc
cagccagggtccctgtccgtcgacaagaagggctacatctttctgacccttcgagaggtc
aacaaggtggtgatcctggatccgaaagggtcgcttcttggcgacttcctgacagcctac
cacggcctggaaaagccccgggtgaccaccatggtggacggcaggtacctggttgtgtcc
ctcagtaatgggaccatccacgtcttccgggttcgttctcccgacaattaa
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