Sciurus carolinensis (gray squirrel): 124970378
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Entry
124970378 CDS
T08117
Name
(RefSeq) eukaryotic translation initiation factor 3 subunit B
KO
K03253
translation initiation factor 3 subunit B
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124970378
03012 Translation factors [BR:
ncar03012
]
124970378
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
124970378
Translation factors [BR:
ncar03012
]
Eukaryotic type
Initiation factors
eIF-3
124970378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eIF2A
WD40_WDHD1_1st
RRM_1
Beta-prop_WDR19_1st
Beta-prop_ELP1_1st
WD40_Prp19
Beta-prop_RIG_2nd
Methyltr_RsmF_N
PALB2_WD40
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
124970378
NCBI-ProteinID:
XP_047389636
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Position
18:complement(14119176..14144784)
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AA seq
802 aa
AA seq
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MQDAENVAAPEAAEERAEPARQQPAAEPPPEEEPAGPGTPEAVRVEDAEEEAAAGRESEL
RAEAEEVAPGPTASPPPSQEPAPQAELSAPAQASALAEQVRDPPADGPAHASAEEAGGPE
GSAAEAEPRVVENGEADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNV
PQVGPDRLEKLKNVIHKIFSKFGKITNDYYPEEDGKTKGYIFLEYASPAHAVDAVKNADG
YKLDKQHTFRVNLFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFES
GDRTSIFWNDVKDPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFS
HQGVQLIDFSPCERYLVTFSPLMDTQDDPQAIIIWDILTGHKKRGFHCESSAHWPIFKWS
HDGKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPAR
VTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREK
QVPVDVVEMKETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVKSNGKIELIKVFDKQQAN
TIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSW
WSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFE
QKDRLSQSKASKELVERRRTMMEDFRKYRKAAQELYMKQKNERLELRGGVDTDELDSNVD
DWEEETIEFFVTEEVIPLGNQE
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacgcggagaacgtggcggcgcccgaggcggccgaagagcgggccgagcccgcg
cggcagcagccggccgccgagccgccgccggaagaggagccggcggggcctggcacaccc
gaggcggtgcgggtggaggacgccgaggaggaggcggcggccgggcgggagtccgagctg
agggccgaagcggaggaggtggcccccggcccgaccgcgtctccgccgccctcccaggag
cccgcgccgcaggccgaactttccgcccccgcgcaggcctcggccttggcggagcaggtc
cgcgacccgcctgctgatggcccggctcatgcgtcggcggaggaggctggcggacccgag
ggcagcgcggccgaggctgaaccgcgtgtggtggagaacggcgaggcggacgagccctcc
ttcagcgaccccgaggactttgtggacgacgtgagcgaggaagaattacttggtgatgta
ctcaaagatcgtccccaggaagcagatggaattgattcagtgattgtagtggacaatgtt
cctcaggtgggccctgaccgacttgagaagctcaaaaatgtcatccacaagatcttttcc
aagtttgggaaaatcacaaatgattattatcctgaagaggatggaaagacaaaagggtat
atcttcctggaatatgcgtctcctgctcatgctgtggatgctgtaaaaaatgctgatggt
tataagcttgataagcagcacacattccgggtcaacctcttcaccgattttgacaagtat
atgacgatcagtgacgaatgggatattccagagaaacagcctttcaaagacctgggaaat
ttacgttactggctggaagaggcagaatgtagagatcagtacagtgtgatttttgagagt
ggagaccgtacatcgatattctggaatgatgtgaaggaccctgtctcaattgaagaaaga
gcaagatggacagagacatatgtgcgttggtctcctaagggcacttacctggcaaccttt
catcagagaggcattgctctttgggggggagagaaattcaagcaaatccagagattcagc
caccaaggagttcagctcattgacttctcaccttgtgaaagatacctggtgacttttagc
cccttgatggacactcaggatgaccctcaggccataatcatctgggatatccttactggg
cacaaaaaaagaggatttcactgtgaaagctcagcccattggcctatttttaagtggagc
catgatggtaaattctttgcaagaatgacgcttgatactcttagcatctatgaaactcct
tctatgggtcttttggacaagaagagtttgaagatctctggaataaaagatttttcttgg
tctcctggtggtaacataatagccttttgggtccctgaagacaaagacattccagccagg
gtaaccctgatgcagcttcctaccagacaagagatacgagttaggaatctatttaatgtt
gtggactgcaagctgcattggcaaaaaaacggagattatttgtgtgttaaagtagatagg
actccaaaaggaacccagggtgttgtcacaaattttgaaatcttccgaatgagagagaaa
caggtacctgtggatgtggttgagatgaaggaaaccatcatagcctttgcctgggaacct
aatggcagcaagtttgctgtgttacatggagaagctcctcggatatctgtctccttctac
cacgtgaagagcaatgggaagattgagctcatcaaagtgttcgacaagcagcaggcaaac
acgatcttctggagcccccaggggcagttcgtcgtgttggctggtctgaggagtatgaac
ggtgccttagcatttgtcgacacttccgactgtactgtcatgaacattgcagagcactac
atggcctctgacgtcgagtgggatccaactgggcgctatgtggtcacctctgtgtcctgg
tggagccataaggttgacaatgcttactggctgtggacattccaaggacgccttctgcag
aagaataataaagatcgcttctgccagctgctctggagaccgcggccccccacacttctc
agccaggaacagataaagcaaattaaaaaggatctgaagaaatactccaagatctttgaa
cagaaggaccgtttgagccagtccaaagcatcaaaggaattggtggagaggaggagaacc
atgatggaagatttccggaaataccgaaaagcggcccaagaactctacatgaagcagaaa
aatgaacgtctggaactgagaggaggtgtggacactgacgagctggacagcaacgtggat
gactgggaagaggagaccattgagttctttgttactgaggaggtgattcctcttgggaac
caagagtga
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