Sciurus carolinensis (gray squirrel): 124970455
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Entry
124970455 CDS
T08117
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 2 isoform X1
KO
K17908
autophagy-related protein 18
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04136
Autophagy - other
ncar04140
Autophagy - animal
ncar05010
Alzheimer disease
ncar05014
Amyotrophic lateral sclerosis
ncar05016
Huntington disease
ncar05017
Spinocerebellar ataxia
ncar05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124970455
04136 Autophagy - other
124970455
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
124970455
05014 Amyotrophic lateral sclerosis
124970455
05016 Huntington disease
124970455
05017 Spinocerebellar ataxia
124970455
05022 Pathways of neurodegeneration - multiple diseases
124970455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124970455
03029 Mitochondrial biogenesis [BR:
ncar03029
]
124970455
Membrane trafficking [BR:
ncar04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
124970455
Mitochondrial biogenesis [BR:
ncar03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
124970455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
DUF7165
Beta-prop_Vps41
Beta-prop_RSE1_2nd
BCAS3_WD40
RMC1_N
VID27
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
124970455
NCBI-ProteinID:
XP_047389767
LinkDB
All DBs
Position
18:12529786..12563942
Genome browser
AA seq
445 aa
AA seq
DB search
MNLASQSGEAGAGQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI
VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLY
IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI
PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM
DGMFLSASSNTETVHIFKLETVKEKPPEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR
AFATVRLPFCGHKNICSLATIQKIPRLLVGASDGYLYMYNLDPQEGGECALMRQHRLDGS
METTSEIVDSASHDCPLVTQTYSAAAAKAAYVPSSPTRLGKGQDANLEAYTDDLGAVGGA
CLEDEASALRLDEDSEHPPMILRTD
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggcgagccagagcggcgaggccggcgccggccagctgcttttcgccaacttc
aaccaggacaatacgtccctagctgttggtagtaagtccggttataaatttttctccctt
tcttctgtggataagctggaacagatctatgaatgcactgatactgaagatgtgtgcatc
gtagagagattgttctcaagcagtttagtggccatcgttagcctcaaggctcccaggaag
ctaaaggtttgccactttaagaagggaaccgagatctgcaactacagctactctaacacc
atcctggccgtgaagctcaacaggcagaggctcatcgtgtgcctggaagagtctctatat
atacacaacattcgggacatgaaggttctgcacaccatcagggagacccccccaaaccct
gcaggcttgtgtgcactgtcaataaacaacgacaattgctacttggcatatccagggagt
gcaaccatcggagaggtgcaggtcttcgacaccattaatttgagagctgcaaacatgatc
ccagctcatgacagccctttagcagcactggcttttgacgcaagtggaaccaaacttgcc
acggcttctgagaaggggaccgtgattagggtgttttccattccagagggacaaaaactc
tttgagttccggagaggagttaagaggtgtgtgagcatctgctccttggccttcagcatg
gacggcatgttcctctctgcgtccagcaacactgagactgtgcacatcttcaaacttgag
actgtgaaagaaaaacctccagaggagcccaccacctggactggctactttgggaaggtg
ctcatggcatccaccagctacctgccctctcaagtgacagaaatgttcaaccagggcaga
gcctttgccactgtccgcctcccattctgtggccataagaacatctgctcgttagccaca
attcagaagattcctcggttgttggtgggagcttctgacggctacttgtatatgtacaac
ctggacccccaggaaggtggcgagtgtgccctgatgcgacagcacaggctggacggcagc
atggagaccaccagtgaaattgtggactctgcctctcacgactgccccttagtaactcag
acgtacagcgcagcagccgcaaaagctgcctacgtgccctcgtctccaacaagacttggt
aaggggcaggacgcaaacctagaagcctatacggacgacctgggtgccgtgggtggagcg
tgtcttgaagatgaagccagtgccctgcgcctggacgaagacagcgagcatcctcccatg
attcttcggactgactga
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