Sciurus carolinensis (gray squirrel): 124970554
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Entry
124970554 CDS
T08117
Name
(RefSeq) NFX1-type zinc finger-containing protein 1
KO
K27391
NFX1-type zinc finger-containing protein 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
124970554
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
ZnF_RZ-type
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
PhoH
DEAD
HOOK_N_NuMA
nSTAND3
Phage_RBD_prop
AAA
Motif
Other DBs
NCBI-GeneID:
124970554
NCBI-ProteinID:
XP_047389923
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All DBs
Position
2:11361466..11386985
Genome browser
AA seq
1924 aa
AA seq
DB search
MNSSDLNMEDRRPHLEARPRNPHTNHRGPMDGELPPRARNQANNPPANALRGGTNHPGRH
PRANNHAVPYRQREERFRAMGRNPHQGRRNQEGHTSDEARGQRHGQENDARRRNDNQEGR
NRRPPWSNENFQQWRTPHQKPTEQPQQVKKLGYKFLESLLQKDPSEVVITLATSLGLKEL
LSHSSMKSNFLELICQVLRKACSSKMDRQSILHVLGILKNSKFLKVCLPAYVVGMITEPI
PDIRNQYPEHISNIISLLQDLVSVFPASSVQETSMLISLLPASLNALRASGVDIEEETEK
NLEKVQTIIEHLQEKRREGTLRMDTYTLVQPEAEGHVESYRTMPIYPTYNEVHLDERPFL
RPNIISGKYESTAVYLDTHFRLLREDFVRPLREGILELLQSFEDQCLRKRKFDDIRIYFD
TRIITPVCSSSGIVYKVQFDTKPLKFVRWQNSKRLLYGSLVCMSKDNFETFLFATVSNRE
QEDLCRGIVQLCFNEQSQQLLAEVQPSDSFLMVETTAYFEAYRHVLEGLQEVQEEDVPFQ
RNIVECDSHVKEPRYLLMGGRYDFTPLIENPSTTGESLRTVEGLRRPRVNVLDLSQWPSK
EALKLDDSQMEALQFALTRELAIIQGPPGTGKTYVGLKIVQALLTNESVWQISLQKFPIL
VVCYTNHALDQFLEGIYKCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRNLPMHLRR
AYMSIMTEMKESEQELHEGAQTLECTMRGVLREQHLEKYISPRHWESLMSGPMQDSEWIY
FQHWKHSMMLEWLGLGVGSFTQNVASAGPENTAQAEGEEEEEGEEEGSLIEIAEEADLIQ
ADRVIEEEEVVRPRRRKKEENGADQELAKMLLAMRLDHYGSGTTAGQEQATGEWKTQRNQ
KKKMKKKVKVELRKLNTMTEAEANEIQDVWQLDLNSRWQLYRLWLQMYQADTRRKILSYE
RQYRTSAERMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLE
AHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQH
RMRPEIARLLTPHIYQDLENHPSVLKYEKIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHE
AHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGVKVHVVDKYQGEEND
IILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLREN
NQIGQTLRLCCQNHPDTHTLVSKASDFQKVPEGGCSLPCEFRLGCGHVCTRACHPYDSLH
KEFQCMKPCQKVICQDGHRCPLVCFQECQPCQVKVPKTIPQCGHEQMVPCSMPESDFCCQ
EPCPKVLRCGHRCSHPCGELCVQLCSEMVTVKLKCGHSQQVKCGHVEDLKYDMPVKCTTK
CDTTLDCGHPCPGSCHSCFEGRFHERCQQPCKRLLICSHKCQEPCIGECPPCQRTCQNRC
VHSQCKKKCGELCSPCVEPCVWHCQHYQCTKLCSEPCNRPPCYVPCTKLLACGHPCIGLC
GEPCPKKCRVCHMDEVTQIFFGSEDEPDARFVQLEDCSHIFEVQALDRYMNEQKDEEVAI
KLKVCPICQVPIRKNLRYGTSIKQRLEEIEVIKEKIQGSAGEIATSQDRLRALLESKSLL
HQLLPEDFLMLMEMLAQKNLSVRDLGLVENYINFYDHLANLWDSLKKINVLEQSKVRTRL
DQVHGWLAKKRLSFTSQELSDLQSEIQRLTYLVNLLTRCKMAEGKVKGSVAQEVYSIRNI
LEKTCKFTQEEEQLVQKKMDALKAILPCSGLGISEEERVQIVSAMGFPRGHWFKCPNGHI
YVISECGGAMERATCPDCQEVIGGESHTLERSNQLASEMDGAQHPAWSDTANNLMNFEEI
RRMI
NT seq
5775 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaagtgacttaaacatggaagacagaagacctcatctggaggccaggcccagg
aatccccataccaaccacagagggcctatggatggagaattaccaccaagagctagaaat
caggccaataacccaccagccaatgctctcagaggaggaaccaaccatcctggaaggcat
cctagggccaacaatcacgctgttccttaccggcaaagagaagagagatttagggccatg
gggaggaacccacatcagggcaggaggaaccaggaaggccataccagtgatgaagctaga
ggccaaagacatggtcaggagaatgatgccaggcggagaaatgacaaccaagagggtagg
aatcgcagaccaccatggtccaatgaaaatttccagcagtggcgaaccccccaccagaag
cctacagaacagccacagcaggtaaagaaactgggctataagttcctagaaagtcttctg
caaaaagacccctctgaggtggtcatcacgcttgccacaagtttagggctgaaggaacta
ctgtctcactcttccatgaaatccaacttccttgagctcatctgccaggttcttcggaag
gcttgcagctccaaaatggaccgccagagtattcttcatgtactaggcatattgaagaac
tccaaattcctcaaagtttgcctgcctgcttatgtggtagggatgattactgaacccatt
cctgacattcgaaaccagtatccagaacacataagcaatatcatctccctcctccaggat
ctcgtaagcgtcttccctgccagctctgtgcaggaaacttccatgctcatttctctcctg
ccagcttctcttaatgctttgagagcctctggtgttgacatagaagaggagacagaaaag
aacctggaaaaggtgcagaccattattgaacatctacaggaaaagaggcgagagggcact
ttgagaatggatacctatactctagtgcagcctgaggcagaaggccatgtagagagctac
cggacaatgcccatctaccctacctacaatgaagtgcacttagacgagaggcctttcctt
cgccccaacatcatttctggaaaatatgagagcactgctgtctatctggatacccacttc
cgactcctaagagaagattttgtcagacccctgcgggaaggcattttggaacttctccaa
agctttgaagaccagtgtttgaggaagaggaagttcgatgacatccggatttactttgat
acgaggattatcactcctgtgtgttcatcatcaggcattgtctataaggttcaatttgat
acaaaaccactgaagtttgttcgctggcagaattctaagcgattgctgtatgggtccttg
gtatgcatgtccaaggacaactttgagacatttctttttgccactgtttctaaccgggag
caagaagatctctgccgaggaattgtccaactctgtttcaatgagcagagccaacagctg
ctagcagaagttcagccctctgactctttcctcatggtggagacaacagcttactttgag
gcttacaggcatgttctggaaggactccaagaggtccaggaagaagacgtccccttccag
aggaatattgtggaatgtgactctcatgtgaaggagcccaggtacttgctaatggggggc
agatatgatttcacccccctaatagagaatccttcaaccacaggggaatctctaaggact
gttgagggtctgagacgtcctagagtcaatgtcttagaccttagccagtggccctcaaaa
gaagccctgaagctggatgactcccagatggaagccttgcagttcgctctcacaagggaa
ctggctattattcaaggacctcctggaacaggcaaaacctatgtgggtctaaaaattgtt
caagccctcctaaccaatgagtccgtttggcaaattagtctccaaaagttccccatcttg
gttgtatgttatactaatcatgctttggaccagtttctggaaggcatctacaagtgtcaa
aagaccagcatcgtgcgggtgggtggaaggagcaacagtgaaatcctgaagcagttcacc
ctgagggaactgaggaacaagcgggaattccgccgcaacctccccatgcacctccgaaga
gcctacatgagtatcatgaccgagatgaaggaatcagagcaagagctccacgaaggtgcc
cagaccctagagtgcaccatgcgtggtgtcctccgggaacagcacttggagaagtatatc
tccccccggcactgggaaagcctgatgagtgggccaatgcaggacagtgagtggatctat
ttccagcattggaagcactccatgatgcttgaatggctgggtctaggtgttggttctttc
actcaaaatgttgcctcagctggacctgaaaacacagcccaggcagaaggggaagaagag
gaagaaggagaagaggaggggtcgctgattgagatcgcagaggaggctgacttgattcaa
gcagaccgagtgatcgaggaggaagaggtagtgaggccccggcgacggaagaaggaagag
aatggggcagaccaggagttggctaaaatgcttttggccatgagactagaccactatggc
tctggaaccacagctggacaagagcaagctacaggagagtggaagacccagcgtaaccag
aagaagaaaatgaagaagaaagtgaaggttgaacttcgcaaactgaacaccatgactgag
gctgaggccaatgagatccaggatgtctggcagctggacctgaattctcgctggcagctt
tataggctgtggctacagatgtaccaagccgacactcgccggaagatccttagctatgaa
cgccagtaccgcacgtcagcagagagaatggctgagctgagactccaggaagacctccac
atccttaaagatgcccaggttgttggcatgacaaccacaggtgctgcgaaataccgccag
attctacagaaggtggagcctcgcatcgtcattgtggaagaggctgctgaagtccttgag
gcccataccattgctacattgagcaaagcttgccagcacctcatcctgattggggaccac
cagcagctgcgccccagtgccaacgtttatgatctggccaagaacttcaaccttgaggtg
tccctttttgaacggctagtgaaagtaaacattccctttgttcgtctgaattaccagcac
cgcatgcgccctgagattgcccgccttttgaccccccacatctatcaggatctggagaat
catccctctgttctcaagtatgagaagattaagggggtctcttccaaccttttctttgta
gaacacaactttcctgaacaggagatccaagaaggcaaaagccatcagaaccagcatgag
gctcactttgtagtagagctgtgcaagtacttcctgtgccaggagtacctgccctcccag
atcaccatccttaccacctacaccgggcagcttttctgcctgaggaagctcatgcctgcc
aagacatttgctggcgtcaaggtccatgttgtggacaaataccaaggggaagagaatgac
atcatcctcctctcactagtgcgaagcaaccaggagggcaaggtgggtttcctccagata
tccaaccgcatctgcgtggccttgtccagagccaagaaagggatgtactgcattgggaac
atgcagatgctagccaaggtgcccttgtggagcaagatcattcatacccttcgagagaac
aatcagataggccaaacgctccgactgtgctgtcagaaccaccctgatacccacacctta
gtatccaaagcttctgactttcaaaaagtacccgagggaggctgcagcctgccctgtgag
ttccgtctaggctgtgggcatgtctgcacccgtgcctgccacccctatgattccttgcat
aaggagttccagtgcatgaagccatgccaaaaggtcatctgccaagatgggcaccggtgc
ccccttgtttgtttccaggagtgtcagccttgtcaggtgaaggtacccaaaaccattcct
cagtgtggccatgaacagatggtcccttgttcaatgcctgagtcagatttctgctgccag
gagccctgccctaaggtcctgagatgtggccaccgatgtagccacccgtgtggtgagctc
tgtgtgcagctgtgttcagaaatggtcactgtgaaactcaaatgtgggcacagccaacag
gtgaaatgtggtcatgtggaagacctcaagtacgacatgccagtcaagtgtaccaccaag
tgtgataccaccctggactgcgggcacccttgccctggctcctgccacagctgttttgaa
gggcgcttccatgagcgttgtcagcagccctgcaagcgcctgcttatctgctcacacaag
tgccaggagccctgcattggcgagtgcccgccctgtcagcggacgtgtcagaaccgttgt
gtccatagccagtgcaagaagaagtgtggtgagctgtgcagcccctgcgtggagccctgt
gtctggcactgccagcactaccagtgcaccaaactctgctctgagccctgcaaccgaccc
ccgtgctatgtgccttgtactaagttactggcttgtggccacccttgcattggtctgtgt
ggagagccatgccccaagaagtgccgtgtctgccacatggatgaggtcacacaaatcttc
tttggctccgaggatgagcccgatgcccgctttgtgcagctagaagactgcagccacatc
tttgaggtacaagccctggaccgctacatgaacgagcagaaggatgaagaagttgccatc
aagttgaaggtctgccccatctgccaggtgcccatccgcaaaaacctgaggtacggaacc
agcatcaaacagcgactagaggaaatcgaagtcatcaaggaaaagatccagggctcagca
ggggaaattgcaaccagccaggaccgactgagggccctgctggagagcaaaagcctcctc
caccagctgctccctgaagatttcctgatgctgatggagatgttggcccagaaaaatctg
tcagtcagggacctggggcttgttgagaattacatcaacttctatgaccacttggccaac
ctatgggattctctgaaaaagataaatgtcttagaacagagtaaagtgaggactcgactc
gaccaagtccatgggtggctggccaagaagcgcttgagctttaccagccaggaactgagt
gaccttcagagtgaaatccagaggctcacatacctggtaaacctcctgacccgctgcaag
atggcagaagggaaggtgaaagggagcgtagcacaagaggtctacagtatccggaacatc
cttgagaaaacctgtaagttcacccaggaggaggagcagcttgtgcagaaaaaaatggat
gctctaaaagccatccttccctgctctggcctgggcatctcagaggaagaacgagtgcag
attgttagcgccatgggtttccctcgtggtcactggttcaagtgccccaatggccacatt
tatgtgattagtgaatgtggaggagccatggagagggccacttgtcctgactgccaggag
gtgattggtggtgaaagtcacactctggaaaggagcaaccagcttgcctctgagatggac
ggagctcagcaccctgcctggtctgacacggccaacaacctgatgaactttgaggagatc
cggaggatgatatag
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