Sciurus carolinensis (gray squirrel): 124970569
Help
Entry
124970569 CDS
T08117
Name
(RefSeq) MHC class II transactivator-like isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04612
Antigen processing and presentation
ncar05145
Toxoplasmosis
ncar05152
Tuberculosis
ncar05164
Influenza A
ncar05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
124970569
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
124970569
09171 Infectious disease: bacterial
05152 Tuberculosis
124970569
09174 Infectious disease: parasitic
05145 Toxoplasmosis
124970569
09163 Immune disease
05340 Primary immunodeficiency
124970569
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ncar01001
]
124970569
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ncar04054
]
124970569
Enzymes [BR:
ncar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
124970569
Protein kinases [BR:
ncar01001
]
Serine/threonine kinases: Other
TAF1 family
124970569
Pattern recognition receptors [BR:
ncar04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
124970569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
AAA_16
LRR_14
LRR_9
Motif
Other DBs
NCBI-GeneID:
124970569
NCBI-ProteinID:
XP_047389942
LinkDB
All DBs
Position
18:complement(33159238..33207314)
Genome browser
AA seq
1193 aa
AA seq
DB search
MDHFQAILAQVRTLLSSHQPRRVRALLDVLREEELLSREYHGALLLEPDGEALARKISLT
LLGKGDLHLALLGGAERDHGGTGQCAAMDLGPLEGSYLELLHSSADPLHLYHFYDQMDLA
GEEEIEPCSEPDTDNINCDQFSRLLCDIEGDEETREAYANIAELDQYVFQDSQLEGLSRD
IFMEHIGSDGVLGEGLEVPADAEQRSQKRPFSEEHPTDLKHRKLAEVPAVPIVTGSFLVG
PASNPPTLPSLPAALFHQEPAPSQSHPEKAVPLPEPSSGAAVSRLHLPAGPIQIVSVLPA
LPQGLWHISGPSTGLSSVFICHGEMSPTSQALPSSGPAIHGLLKSPARPGSTSPFAPSAA
DLPSMPESALTSRAPGTEDKGSPGQTAPEVSSKLPKWPEAVQRFCSWLRDRYRAEPAGPD
GIMVEVDLVSARLEKGSNKSQERELATPDWAERQPARGGLAEVLRTASDGRRPRETQVIA
VLGKAGQGKSHWARAVSRAWARGQLPQYDFVFCVPCRCLDRPGDAFHLRDLLCSLGPQPL
AVDDVVFRHILRRPDRVLLTLDAFEELEAHDGFLHGSGGQAPAERGSLRGLLAAVFQRKL
LRGCTLLLTARPRGRLAQILSKADALFEVAGFSAEQTQAYVRRYFENSEVTDHPERALAL
LRDRPFLLSHSHSPAICRAVCQLSEALLELGDQAELPSTLTGLYVGLLGPVARGSPPGAL
AGLAKLAWEMGRAHQGTVREGQLPSQEARAWAVAGGLVRPVPGAAEAELAFSSFLLQCFL
GALWLALSSDIKDKELPQYLALTPRKKRPYDNWLEAVPRFLAGLVFQPRDGCLGALVAPA
EASSADRKQRALARYLKRLQPGALRARRLLELLHCAWEAQEAGIWQHVVRELPARLSFLG
TRLSPPDAHVLGEALSAACRDFTLDLRGTGIDPSGLESLVGLGSVTRFRAALSDTMGLWE
SLQQRGETQLLQATEEKFTIEPFKAKSLKDVEDLGNLVQTQRLRSSSEDAPGALPAVRDL
KKLEFALGPLLGPQAFPKLAKILPAFSSLQHLDLDSLSENKIGDQGVAQLAAVFPQLKAL
ETLNLSQNSITDVGACQLAEALPSLAASLLRLSLYNNSICDLGAESLARVLPDMVSLRVL
DVQYNKFTTVGAQQLASSLRKCPHVETLAMWTPTIPFGVQEHLQQLDSRISLR
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggaccacttccaggccatcctggctcaggtgcggaccctgctctccagccaccagccg
aggcgcgtgcgggccctcctggatgtgctgcgcgaggaggagctgctctccagggagtac
cacggcgccctgctcctcgagcccgacggcgaggctctggcccggaagatctccctgacg
ctgctggggaaaggagacctgcacctggccctcctggggggcgctgagagggaccatggc
ggcactgggcagtgcgccgccatggacctggggcccctggaaggcagctacctggagctc
ctgcacagcagcgccgaccccctgcacctctaccacttctacgaccagatggacctggcg
ggggaggaggagatcgagccctgctcagaacccgacacggacaacatcaactgcgaccag
ttcagcaggctgttgtgtgacatagagggagacgaggagaccagagaggcgtatgccaac
atcgcggaactggaccagtacgtgttccaggactcacagctggagggcctgagcagggac
attttcatggagcacataggatcggacggggtgctcggcgagggcctggaggtgccagca
gatgcagagcagaggagccagaaaagacctttctcagaggagcatcccacagacctgaag
cacaggaagctagccgaggtccctgctgtgcccatagtgactggcagtttcctggtggga
ccagcaagcaaccccccgaccctgcccagcctgccagctgctctgttccaccaggagcca
gcacctagccagagccacccagagaaggctgttccgctgcccgagccttcctcgggggcg
gcggtgagccgcctgcaccttcctgctgggcccatccagattgtctccgtgctgcctgct
ctgccccagggactctggcacatctcagggcccagcacaggtctctccagtgtattcatc
tgccacggtgagatgtccccgaccagccaagcactaccttccagcggccctgccatccac
ggcctcctgaagtcccccgcccggccgggctccaccagccccttcgctccgtctgcagct
gacctgcccagcatgcctgaatcagccctgacctcccgtgcacctgggacggaggacaaa
ggatccccaggccagacagccccagaggtctccagcaagcttccaaaatggcctgaggcg
gtgcagcggttctgcagctggctgcgggacaggtacagggccgagcccgcaggcccggac
ggcatcatggtggaggtggatctggtgagcgccaggttggagaagggcagcaacaagagc
caggagagggagctggccaccccggactgggcagagcggcagccggcccgcgggggtctg
gccgaggtgttgcggactgccagcgacggccgacggcctcgggaaactcaagtgatcgcc
gtgctgggcaaggcggggcaggggaagagccactgggcgcgggccgtgagccgggcctgg
gcccgcggccagcttccacagtacgacttcgtcttctgcgtcccctgccgctgcctggac
cgccctggggacgccttccacctgcgggacctgctgtgctccctgggcccgcagccgctg
gccgtggacgacgtggtcttcaggcacatcctaaggaggcccgaccgcgtgctgctcacc
ctggacgcctttgaggagctcgaggcccacgatggcttcctgcacggcagcggcggacag
gcacctgcagagcgcgggtccctcagagggctgctggccgcggtcttccagcggaagctt
ctgcgaggctgcaccctgctcctcacggcccggccccgcggccgcctggcccagatcctg
agcaaggccgacgcgctgttcgaggtggctggcttctcggctgagcagacccaggcttac
gtgaggcgctactttgagaactcagaggtgacggaccacccagagagggccctggccctc
ctccgggaccggcccttcctcctcagtcacagccacagccccgccatctgcagggcagtg
tgccagctctccgaggccctgctggagctgggggaccaggccgagctgccctccacgctc
acgggactctatgttggcctgctgggccctgtggcccggggcagccccccgggggccctg
gcaggactggccaagctggcctgggagatgggccgcgcccaccagggcactgtgcgggag
ggccagctcccatcccaggaggccagggcctgggctgtggccggaggcttggtgcggcca
gtcccgggggctgccgaggcggagctggccttctccagcttcctcctccagtgcttcctg
ggggccctgtggctggccctgagcagcgacatcaaggacaaggagctgccgcagtatttg
gcattgaccccgaggaagaagaggccctatgacaactggctggaggccgtgccccgcttt
ctggccggactggtttttcagcctcgcgacggctgcctgggagccctggtggcgcccgcc
gaggcctcctctgcagaccggaagcagagggcgctggccaggtacctgaagcggctgcag
cccggcgcgctgcgggccaggcggctgctggagctgctgcactgtgcgtgggaggcccag
gaggccggcatctggcagcacgtggtgcgggagctcccggcgcgcctctccttcctgggc
acacggctctcgcctcccgacgcgcacgtgctgggcgaggccctgagcgcggcctgccgg
gacttcaccctggacctacgtggaacgggcatcgacccctccggcctggagagcctcgtg
ggactcggctctgtcacccgtttcagggccgccttgagcgatacaatggggctgtgggag
tccctgcagcagcgtggggagacccagctactccaggcaactgaggagaagttcaccatt
gagccatttaaggccaagtccttgaaggatgtggaagatctgggcaacctggtgcagacc
cagaggctgagaagttcctctgaagatgccccgggggccctgcctgctgtccgggacctg
aagaagctggagtttgcgttgggccccctcttgggcccccaggcttttcccaaactggca
aagattcttcctgccttttcgtcccttcagcacctggacctggactcgctgagcgagaac
aagatcggggaccagggggtcgcgcagctcgccgccgtcttccctcagctgaaggccctg
gagacgctcaacctgtcccagaacagcatcaccgacgtgggggcctgccagctggccgag
gccctgccctcactcgctgcgtccctcctcaggctcagcttgtacaataactctatctgc
gacctgggagccgagagcctggcgcgggtgcttccggacatggtgtccctgagggtcctg
gatgtccagtataacaagttcacaactgtgggtgcccagcagctggcctccagcctgagg
aagtgcccccacgtggagacactggcaatgtggacacccacgatcccctttggtgtccag
gaacacctgcagcaactggactcccggatcagcctgagatga
DBGET
integrated database retrieval system
