Sciurus carolinensis (gray squirrel): 124970582
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Entry
124970582 CDS
T08117
Name
(RefSeq) partner and localizer of BRCA2-like isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03440
Homologous recombination
ncar03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124970582
03460 Fanconi anemia pathway
124970582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124970582
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
124970582
FA (Fanconi anemia) pathway
Downstream FA components
124970582
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
WD40_WDHD1_1st
Beta-prop_WDR19_1st
TcaA_5th
Motif
Other DBs
NCBI-GeneID:
124970582
NCBI-ProteinID:
XP_047390001
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Position
18:24451972..24476838
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AA seq
1180 aa
AA seq
DB search
MEEPPGKPLSCAEKEKLKEKLAFLKREYSKTLARLQRAQRAEKVKNSVKKTVEQDRSLQQ
EISSQLNHSEPKNEGSPCNKLQINASLVGKTGEKTSVALDAGPESFHPEDGPEKGLHISG
TDDFQEHFPYRVNGPDSEKRQNKLPGRRKKQPKRTYISQERECFFDTDSLSGKRLKKQEA
IKSKNSRSPVTEVPPLSSCKTEIPDFPAPVTETDGENVLIPSTAKPQRVDDTPFKGNSFS
SDTADPLHTISDKSNHEHLEHMPPEGNCELVTQGFRNISLTSPINLEVQGQKMTVSADST
VVHKTTGTTGQLPRSPTLEADNSCSVNKLPYNNVSTKINQNLKEQNHTKKSLKSPSNAFT
GRNENLQENEVLSQSSLEAVTSVSTENQIHSCTMLEGLLFPAEYYVRTTRRMSNCQRKVA
LEAVIQNHLGGRKKGFKNKNKEATKNLNLSTENSDQSGTEILNTGTGQAITRSPTQELLS
SADISSPPGSTKDKDCSRRALVQPAGRRHRGKRKSACTPALGHCELLLPTFSMLGVNRSK
EEVTLDRRQNEKAIIHGKEVRCQKEDSLSSSNNAYLALEDDFSAPFHKNEMLSLKQLLSF
LNIPDFQLPDEDFGSLMLEKLKSCSEKLIEPLESKMYRERHLKEENYVVLEELSPKQIDA
VMEDSEEDLIAIPGKAHPQIPNLKSQPTNKGLSSSMILFTPLTTAASGTDNTPTVDLYSS
ALPMLGATPALGSQACCEKASAKVIGQTCSTSQLSHSEDTVSLTSDNKQCNSSTSPPKLG
TSLRVSGRQEKPAYDRDSGLQATPLPTESLTFRENQLCGNMGLELHKHSTEQTKVADLPT
CDSLNTGSLQLVSKLKNPSSSCSVDVSAMWWERAGFKEPCIITACEYVVSLWKPLDTWQW
EKIYTWHFIEVPVLQIVPVPDVCNLVCVALGSLEIREIRALLCSSDDESEKQVLLKSGNI
KAVLGLTKRRLVSSSGTLCDQQVELLTFAEDGGNKEKQFLMPPEETILTFGEVQGMQDAL
LGTTTMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFVVLSHPCAKEREALG
SPAFQLIVINPKTALNMGVMLYCLPQGQAGRFLEGDVKDHVAAAVLTSGTIATWDLLLGH
CTALLPPTSDQNWSFVKWSGTDSHLLAGQKDGNIFIYRYI
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcctcccgggaagcccctcagctgtgcggagaaggaaaagttgaaggaaaaa
ttagcattcttgaaaagggagtacagcaagacactggcccgccttcagcgtgcccaaaga
gctgagaaggttaagaattctgttaagaaaacggtagaacaggatcgctcgctccagcag
gaaatctcatcacagctaaaccactcagaacctaaaaatgaaggatctccttgtaacaag
ttacaaatcaatgccagtcttgttgggaaaactggagaaaagacatctgtggcacttgat
gctgggcctgagtcctttcaccctgaagatggcccagaaaaaggattacatatttcagga
acagatgacttccaagaacattttccctacagggtgaatggccctgatagtgagaaaagg
cagaataagctgccagggagaagaaaaaagcagccaaagagaacatatatctcacaggaa
agagaatgtttctttgacactgattcactctctggaaaaagactgaagaaacaggaagca
atcaagagcaaaaattctaggtcaccagtaactgaagtacctcccctttcaagttgtaag
actgaaattccagatttcccagcaccagttacagaaaccgatggagagaatgtattaatt
ccctcaactgccaaaccacaaagagttgatgatacaccatttaaaggaaatagtttctcc
agtgatactgcagatcctttgcatactatatcagataagagtaatcatgagcaccttgaa
cacatgcctccggagggtaactgtgaactcgttactcaggggtttagaaacattagtctt
acttcaccaataaacctggaggtccaaggccaaaagatgactgtctctgcagatagcaca
gtagtacataaaactacaggcaccactggccaactgcctagaagtcctaccttagaggca
gataattcatgttctgtaaacaaactcccttacaataacgtatccacaaagataaaccaa
aacttaaaagaacaaaatcacaccaaaaaatctttaaaatctcccagtaatgcttttact
ggtagaaatgaaaatcttcaggaaaatgaggttctaagtcaatctagcctggaagcagtc
acttctgtttctacagaaaatcaaatacattcttgcacaatgcttgaaggccttctgttt
cccgcagaatactatgttagaacaacgcgtcgcatgtccaattgccagaggaaagtagcc
ctggaagccgtaattcaaaatcatttgggtggcaggaagaaagggtttaaaaataaaaat
aaggaagcaactaaaaatttaaacctttccactgaaaatagtgaccagagtggaactgag
attttgaacacaggcacaggacaagcaatcacaagaagtcctactcaggagcttctctct
tcagctgacatcagctctccccctgggtccaccaaagacaaagactgttctaggagggct
cttgtgcagccagctggcagaagacacagaggaaaaagaaaatcagcctgcaccccagca
ctaggtcattgtgaactgcttttgccaactttcagcatgttgggtgttaacagatccaag
gaagaagtcaccttggacaggcggcagaatgaaaaagccattattcatgggaaggaagtt
cgttgtcaaaaagaggactccctctcttctagtaataatgcttatttagctttggaggat
gatttcagtgctccatttcataaaaatgaaatgctaagtttaaagcaactgttgtctttt
ctcaatatcccagactttcagttacctgatgaagactttgggtcccttatgcttgaaaaa
ctgaagtcctgctcggaaaaactgattgagcctctggaatcaaaaatgtacagagagagg
catcttaaagaggaaaattatgttgttttggaggaactgagtcctaaacaaatagatgca
gtaatggaggactcagaagaggaccttattgctataccaggaaaagcacatcctcagata
ccaaatctcaaaagccagcctaccaacaagggcctttcttcttccatgatactctttact
cctttaactactgctgcctctggcactgacaacacacctactgtagacctgtattcatcc
gctctccccatgttaggcgctactccagctcttggctcccaggcatgctgcgaaaaagca
tctgccaaagttattggacaaacttgctctacatcccaactttctcactcggaagacaca
gtcagcctgaccagtgacaataagcagtgcaacagttccaccagcccacccaaactggga
accagcctacgtgtgtcaggtaggcaggaaaagccagcctatgaccgtgactctggcctc
caagcaacacctctacccactgagtcattgactttcagagaaaatcagctctgtggaaat
atgggcctggagttgcataaacattccactgaacagactaaagtagcagatcttcccacc
tgtgacagcttaaacacaggcagcctacaattggtttcaaagttaaagaatccttccagt
tcctgttccgtggatgtgagtgccatgtggtgggaacgagctggttttaaggagccttgt
atcataactgcttgtgaatatgtagtttctctttggaaacctctggatacctggcagtgg
gaaaaaatttacacctggcatttcatagaggttcctgtattacaaatagttccagtgccc
gatgtttgtaatctcgtgtgtgtagctttgggcagtttggagatcagagaaatcagggca
ttactttgttcctctgatgatgaaagtgaaaagcaagtactactgaagtctggaaatata
aaagctgtgcttggcctgacgaagaggagactagttagtagcagcgggaccctttgtgat
cagcaagtagaactcctgacttttgcagaggacggaggaaacaaagaaaaacagtttttg
atgccccctgaagagacgatacttacttttggtgaggtccaagggatgcaggatgctctg
cttggcactactaccatgaacaacattgttatctggaatttaaaaactggtcaactcctg
aaaaagatgcacattgatgattcttatcaagcttcagtctgtcacaaagcctattctgaa
atggggctcctgtttgttgttctgagtcatccttgcgccaaagagagggaggcattgggc
agccctgcgtttcagctgattgtgattaaccctaagacggccttgaatatgggagtgatg
ctgtactgcctcccacaggggcaggctggaaggttcctagaaggggacgtgaaagatcat
gttgcagctgcagtcttgacttccggaaccattgccacttgggacttacttctaggtcac
tgcactgctctccttccgccgacctctgaccaaaattggtcttttgttaaatggtctggt
accgattctcacttactggctggacaaaaagatggaaatatatttatataccgctacata
taa
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