Sciurus carolinensis (gray squirrel): 124970802
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Entry
124970802 CDS
T08117
Name
(RefSeq) phospholipid-transporting ATPase ABCA3 isoform X1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
124970802
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ncar02000
]
124970802
Transporters [BR:
ncar02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
124970802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
AAA_15
AAA_22
RsgA_GTPase
AAA_29
Cas6_I-A
Motif
Other DBs
NCBI-GeneID:
124970802
NCBI-ProteinID:
XP_047390358
LinkDB
All DBs
Position
18:39768083..39819209
Genome browser
AA seq
1704 aa
AA seq
DB search
MAVLRQLALLLWKNYTLQKRKVLVTVLELFLPLLFSGILIWLRLKIQSENVPNATVYPGQ
SIQELPLFFTFPPPGDTWELAYIPSHSEAAKMVTETVRRSLVINMRVRGFPSEKDFEDYV
RYDNRSSNVLAAVVFQLASNHSKEPLPLAVNYHLRFSYTRRNYMWTQTGNFFLKETEGWH
TTSLFPLFPNPGPREPASPDGGEPGYIREGFLAVQHAVDRAIMHYHANASAHQLFQKLTV
VAKRFPFPPFISDPFLVAIQYQLPLLLMLSFTYTSLSIIQAVVQEKERRLKEYMRMMGLS
SWLHWSAWFLMFFLFLLIVVSFMTLLFCVKVKKNVAVLSSSDPSLVLAFLLCFAISSISF
SFMVSTFFSKANMAAAVGGFLYFFTYIPYFFVAPRYNWMTLTQKLFSCLLSNVAMAMGAQ
LIGKFEAKGTGIQWRDLLSPVNVDDDFCFGQVLGMLLLDSVLYGLVTWYVEAVFPGQFGV
PQPWYFFLMPSYWGGSPRSVVGKEDDDSDPEKALRTEYFEAEPEDLVAGIKIKHLSKVFQ
VGNKDKAAVRDLNLNLYEGQITVLLGHNGAGKTTALSMLTGLFPPTSGRAYISGYEISQD
MVQIRKSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSQQKCPEEVKQMLHILNLEDKRNL
RCRFLSGGMKRKLSVGIALIAGSKVLMLDEPTSGMDAISRRAIWDLLQQQKSDRTILLTT
HFMDEADLLGDRIAIMAKGELQCCGSSLFLKQKYGAGYHMTLVREPHCNPEGISQLVQHH
VPNATLESSVGAELSFILPKESTHRFESLFAKLENKQKELGIASFGASVTTMEEVFLRVG
KLVDTSMDIQAIQLPALQYQHERRASDWAVDSNLSGVMDPTDGIGALIEEEHTVVKLNTG
LALHCQQFWAMFLKKAAYSWREWKMVAAQVLVPLTCVTLALLAINYSSEVFDDPILKLSL
SEYGRTVVPFSVPGTSQLDQQLSELLRDVLQAERQEPREVLGDLEEFLVFRASVEGGGFN
ERCLVATSFRDVGERTVVTALFNNQAYHSPATALAIVDNLLFKLLCGPQASIVVSNYPQP
RSALQAAKDQFNEGRKGFDIALNLLFAMAFLASTFSILAVSERAVQAKHVQFVSGVHVAT
FWFSALLWDLISFLVPTLLLLVVFRAFDVRAFTRDGHTADMLLLLMLYGWAIIPFMYLMS
FFFSGASTAYTRLTIFNILSGIATFLVVTIMRIPAVKLEELSRTLDHVFLVLPNHCLGMA
VSSFYENYETQRYCTSSEVAAHYCKKYNIEYQENFFAWSAPGVGRFVTSMAASGCAYLTL
LFLIETNLLWRLRTLVCAFQKRWTLAELHSRTSMLPEDQDVADERSRVLAPGLDVLLNTP
LTIKELSKVYEQRVPLLAVDRISLAVQKGECFGLLGFNGAGKTTTFKMLTGEEPITSGDA
FVGGYSISSDIGKVRQRMGYCPQFDALLDHMTGREMLVMYARLRGIPEHLIDPCVENTLR
GLLLEPHANKLVRTYSGGNKRKLSTGIALIGDPAVIFLDEPSTGMDPVARRLLWDTVARA
RESGKAIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLRAKVRSEGQ
QEALKEFKAFVDLTFPGSVLEDEHQGMVHYHLPGGDLSWAKVFGILEKAKEKYGVDDYSV
SQISLEQVFLSFAHLQPPTAEEGR
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgctgcggcagctggcgctcctgctctggaagaactacaccttgcagaagcgg
aaggttctagtgacagtcctggagctctttctgcccttactgttttcggggatcctgatt
tggcttcgtttgaagatccagtcagaaaacgtccccaatgccaccgtctatcctggccag
tccatccaggagctgcccctgtttttcaccttccctccgccaggggacacctgggagctc
gcctacatcccttcccacagtgaggctgccaagatggtcactgagactgtgcgaaggtca
ctggtgatcaacatgagagtgcgcggctttccctctgagaaggacttcgaggactacgtt
cggtacgacaaccgctcctccaacgtgctggctgccgtggtattccagctggcctccaac
cacagcaaggagcccctgccgctggcggtgaactatcacctacgcttcagctacacacga
agaaattacatgtggacccaaacaggcaacttcttcctgaaggagacagagggctggcac
accacttccctttttccacttttcccaaacccaggaccaagggaacctgcatcccctgat
ggcggtgaacctgggtacatccgcgagggcttcctggcggtgcagcacgcagtggacaga
gccatcatgcactaccacgccaacgcctccgcgcaccagctgttccagaagctcacagtg
gtcgccaagaggttcccgttccccccgttcatctcggaccccttcctggttgccatccag
taccagctgcccctgctgctcatgctgagcttcacctacacctccctcagcatcatccag
gctgtggtgcaggagaaagagaggagactgaaggagtacatgcgcatgatggggctgagc
agctggctgcactggagcgcctggttcctcatgttcttcctcttcctcctcatcgtggtc
tccttcatgaccttgctcttctgtgtcaaggtgaagaagaacgtggcggtgctctcaagc
agtgacccctccctggtgctggccttccttctgtgtttcgccatctcctccatctcgttc
agcttcatggtcagcaccttcttcagtaaagccaacatggcagcagccgtgggcggcttc
ctctacttcttcacctacatcccctacttctttgtggctcctcggtacaactggatgaca
ctgacccagaagctcttttcctgtctcctgtccaacgttgccatggcgatgggagcccag
ctcatagggaaattcgaagccaaaggcacaggcatccagtggcgagacctcctgagtccc
gtcaatgtggacgacgacttctgctttgggcaagtgctggggatgctgctgctggactct
gtgctctatggcctggtgacctggtatgtggaggccgtcttccctggccagttcggtgtg
ccccagccctggtacttcttcctcatgccctcctactggggtgggagcccgaggtcggtc
gtcgggaaagaagacgatgacagtgaccctgagaaagctctcagaaccgagtacttcgag
gccgagccagaggatctggtggcagggatcaagatcaagcatctgtccaaggtgttccaa
gtggggaataaggacaaggcagccgtcagggacctgaacctgaacctgtacgaggggcag
atcaccgtcctgctgggccataatggtgcagggaagaccaccgcgctttccatgctcaca
ggactctttccacctaccagtggacgtgcgtatatcagtgggtatgaaatttcccaagac
atggttcagatccggaagagcttgggcctgtgcccccagcacgacattctttttgacaac
ctgacggtggcggaacatctctacttctatgcgcagctgaaaggcctgtctcagcagaag
tgccctgaagaagtcaagcagatgctgcacatcctcaatctggaggacaagcgcaacttg
cggtgcaggttcctgagtgggggcatgaagcgcaagctgtccgtcggcatcgccctcata
gcgggctccaaggtgctgatgctggacgagcccacctcaggcatggacgccatctccagg
agggccatctgggaccttcttcagcagcagaagagtgaccgcaccatcctgctgaccacc
cacttcatggatgaggccgacctgctgggggaccgcatcgccatcatggccaagggggag
ctgcagtgctgtgggtcatcgctgttcctcaagcagaaatatggtgctggctaccacatg
acgctggtaagggagccgcactgcaaccccgaaggcatctcccagctggtgcagcaccac
gtccccaacgccacactggaaagcagtgttggggccgagctgtcctttatacttcccaag
gagagcacacacagatttgaaagtcttttcgctaagctggaaaataagcagaaggaattg
ggcatcgccagctttggggcctctgtcaccaccatggaggaagtcttccttcgggttggt
aagctggtggacactagcatggacatccaagccatccagctccctgccctgcaataccag
cacgagaggcgggcgagcgactgggctgtggacagcaatctgagtggggtgatggaccca
actgacggcattggcgccctgatcgaggaggagcacacggtggtcaagctcaacactggg
cttgccctccactgccagcagttctgggccatgttcctgaaaaaggctgcatacagctgg
cgggagtggaagatggtggcggcccaggtcctggtccccctgacctgtgtcaccctagcc
ctcttggccatcaactactcctccgaggtcttcgacgaccccatcctgaagctgagcttg
agcgaatacggcagaactgtggtgcccttctcagttccgggtacctcgcaactggatcag
cagctgtcggagctcctgagagacgtgctgcaggctgagaggcaggagccccgcgaggtg
ctgggtgacctggaggagttcctggttttcagggcctcagtggaaggaggtggctttaat
gaacggtgcctggtggcaacatccttcagagatgtgggagagcggacagtggtcaccgcc
ctgttcaacaaccaggcctaccactccccagccaccgccctggccattgtggacaacctt
ctgtttaagctgctgtgtggccctcaggcctccatcgtggtctccaactacccccagccc
cggagcgccctgcaggctgccaaggaccagttcaatgagggccgaaagggatttgacatc
gccctcaatttgctgtttgccatggcattcctggccagcaccttttccatcctggcagtc
agcgagagggcagtccaggccaagcatgtccagtttgtgagcggtgtccacgtggctact
ttctggttctctgctctgctatgggacctcatctccttcctagtccccactctgctactg
ttggtggtgtttcgagccttcgacgtgcgcgccttcacacgggacggccacacagctgac
atgctgctgttgcttatgctctacggctgggccatcatccccttcatgtacctcatgagc
ttcttcttctctggcgcgtccactgcctacaccaggctgaccatcttcaacattctgtca
ggcatcgccaccttcctcgtggtcaccatcatgcgcatcccagccgtgaagctggaagaa
ctttccagaaccttggatcacgtgttcctggtgctgcccaaccactgtctggggatggcc
gtcagcagcttctatgagaactacgagacgcagcggtactgcacctcctcggaggtcgct
gcccactactgcaagaaatacaacattgagtaccaggagaacttctttgcctggagtgcc
ccaggggtcggcaggtttgtgacctccatggctgcctcggggtgtgcctacctcaccctg
ctcttcctcattgagaccaacctgctgtggagactgaggaccttggtctgtgccttccag
aagaggtggacactggcagaattacacagccggacctccatgcttcctgaggaccaggat
gtggcagacgagaggagccgagtcctggcccccggcctggatgtgctactcaacacacct
ctgaccatcaaggagctctccaaggtgtatgagcagcgggtgcccctcctggctgtggac
aggatctccctcgctgtccagaaaggggagtgctttggcctgctgggcttcaacggagct
gggaaaaccacaacgttcaagatgttgactggggaggagcccatcacctcaggggatgcc
tttgttgggggctacagcatcagctctgacattgggaaggtgcggcagcggatgggctac
tgtccccagtttgatgccctgttggaccacatgactggccgggagatgctggtcatgtat
gcacggctccgaggcatccctgagcacctcattgacccctgcgtggagaatacactgcgg
ggcctgctccttgagccacatgccaataagctggtcaggacctacagcggtggtaacaag
cgcaaactgagcaccggcattgccctcatcggagatcctgcggtcatcttcctggatgag
ccgtccactggcatggaccctgtggcccggcgcctgctttgggacaccgtggcccgggcc
cgcgagtctggcaaggccattgtcatcacctcccacagcatggaggagtgtgaggccttg
tgcacccggctggccatcatggtgcagggtcagttcaagtgcctgggaagcccacagcac
ctcaagagcaagtttggcagcggctactccctgcgggccaaagtccgaagtgaagggcag
caggaagcactgaaggagttcaaggcgtttgtggacctgacttttccaggcagtgtctta
gaagatgagcaccaaggcatggtccactaccacctgcctggaggcgacctcagctgggca
aaggtttttggtatcctggagaaagccaaggagaagtatggagtggatgactactcagtg
agccagatctcactggagcaagtcttcctgagctttgcccacctgcaaccccccactgca
gaggagggacgatga
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integrated database retrieval system
