KEGG   Sciurus carolinensis (gray squirrel): 124970812
Entry
124970812         CDS       T08117                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03030  DNA replication
ncar03410  Base excision repair
ncar03420  Nucleotide excision repair
ncar03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    124970812
   03410 Base excision repair
    124970812
   03420 Nucleotide excision repair
    124970812
   03430 Mismatch repair
    124970812
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ncar03032]
    124970812
   03036 Chromosome and associated proteins [BR:ncar03036]
    124970812
   03400 DNA repair and recombination proteins [BR:ncar03400]
    124970812
DNA replication proteins [BR:ncar03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    124970812
  DNA Replication Termination Factors
   ELG1-RFC complex
    124970812
Chromosome and associated proteins [BR:ncar03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    124970812
DNA repair and recombination proteins [BR:ncar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     124970812
  Check point factors
   HRAD17(Rad24)-RFC complex
    124970812
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 AAA_14 AAA_16 Viral_helicase1 Rad17 AAA_24 Mg_chelatase AAA_11 RuvB_N AAA_assoc_2 nSTAND3 AAA_18 AAA_19 MipZ AAA_5 AAA_28 AAA_25 AAA_23 AAA_30 T2SSE NTPase_1 ABC_tran RNA_helicase SLFN-g3_helicase MeaB FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 124970812
NCBI-ProteinID: XP_047390379
EnsemblRapid: ENSSCRG00010021240
LinkDB
Position
18:5037474..5052303
AA seq 352 aa
MEVQPGGGGAGERAAEDPAPGPSKASGGAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEV
FAREGNLPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKM
FAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQ
SRCAVLRYTKLTDAQILARLLSVMEKEEVRYTDDGLEAIIFTAQGDMRQALNNLQSTFSG
FGFINSENVFKVCDEPHPLLVKEMLQHCVDGSIDEAYKILAHLWHLGYSPEDVIGNIFRV
CKTFQMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLARLCQKTMAPVAS
NT seq 1059 nt   +upstreamnt  +downstreamnt
atggaggtccagcctggcggaggtggcgcgggggagcgcgcggccgaggaccctgcgcca
ggccccagcaaggcctccggcggcgccggccactacgagctgccgtgggttgaaaaatac
aggccagtaaagctgaatgaaattgttgggaatgaagacactgtgagcaggctagaggtc
tttgcgcgagaagggaacctgcccaatatcatcatcgcgggtccccctggaactggcaaa
actaccagcatcctgtgtctggcccgagccctgctgggcccggcgctgaaggatgctgtc
ctggaactcaacgcctccaacgacaggggcattgacgtcgtgagaaataaaatcaaaatg
tttgcccaacagaaggtcaccctccccaaaggccggcacaagatcatcatcctggatgag
gcagacagcatgactgacggagcccagcaggccctgaggaggaccatggagatctactcc
aagaccacgcgcttcgctctggcctgcaacgcttccgacaagatcatagagcccattcag
tcccggtgcgccgtgctccgctacaccaagctcacggacgcccagatcctggcgaggctc
ctgagtgtcatggagaaggaggaggtgcggtacacagacgacggcctggaagccatcatc
ttcaccgcccagggggacatgaggcaggctctgaacaacttgcagtccaccttctcgggg
ttcggctttatcaacagtgagaacgtgttcaaggtctgcgacgagccccacccgctgctg
gtgaaggagatgctccagcactgcgtggatggcagcatcgacgaggcctacaagatcctc
gctcacctgtggcatctgggctactctccggaggatgtcatcggcaacattttccgagtg
tgtaagactttccagatggccgaatacctgaagctggagttcatcaaggagattggatac
actcacatgaaggtcgcagaaggcgtgaactcccttctgcagatggcggggctgctggcc
aggctgtgtcagaagacgatggccccggtggccagttag

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