Sciurus carolinensis (gray squirrel): 124971018
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Entry
124971018 CDS
T08117
Name
(RefSeq) N-glycosylase/DNA lyase isoform X1
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
124971018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124971018
Enzymes [BR:
ncar01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
124971018
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
124971018
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
HHH
RecR_HhH
Motif
Other DBs
NCBI-GeneID:
124971018
NCBI-ProteinID:
XP_047390647
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All DBs
Position
19:complement(15278437..15291040)
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AA seq
380 aa
AA seq
DB search
MVARSLLLGSMRHRTLSSSLALWASIPCPRSELRLDLVLASGQSFRWKEQSPAHWSGVLG
DQVWTLTQTEELLYCTVYRGDKGWVGRPTPEELETVQKYFQLDVSLAQLYNHWSSVDSHF
QKVAQKFQGVRLLRLDPIECLFTFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHG
FPNLQALAGRTRGCLTPALLPLPTGSEVEPCLRKLGLGYRAHYVSASARAILEEHGGLVW
LQQLREVPYEEAHKALCTLPGVGTKVADCICLMALDKPQAVPVDVHVWQIAQRDYSWHPT
TSQARGPSPQANKELGNFFRSLWGPYAGWAQAVSVPRFPLLSSPDPKELPPIPDPVGFSS
SLSPWTLTSTTPGNPNGLSN
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atggtggcccgctcccttctgcttggtagcatgaggcatcgtaccctatcctcgagcctg
gccctctgggcctccatcccgtgtccacgctctgaactacgcctggacctggttttagct
tctggacaatccttccggtggaaggagcaaagccctgcacactggagtggcgtgctggga
gatcaagtatggacactgactcaaactgaggaactgctctactgcactgtgtaccgaggg
gacaagggatgggttggcaggcccacacctgaggagctggagacagtgcagaagtacttc
cagctagatgtcagcctggctcaactgtacaaccattggagttctgtggactcccacttt
caaaaggtggctcagaaattccaaggtgtgcgactgctgcgactggaccccattgaatgc
cttttcacctttatctgttcttccaacaacaacattgcccgcatcactggcatggtggaa
cggctgtgccaggcttttggacctcggctcatccagcttgatgatgtcacctaccatggt
ttccccaacctgcaggctctggctggaaggactcgaggatgcctgacccctgctctcctc
ccactccccacaggttcggaggtggagccttgcctcaggaagttgggcctggggtaccgt
gcccactatgtgagtgccagtgcccgagccatcctggaagaacatggtgggctggtctgg
ctgcaacagcttcgagaggtcccctatgaggaggcacacaaggccctctgcaccttgcct
ggggtgggcactaaggtggccgactgcatctgcctcatggccctagacaaaccccaggct
gtgcccgtggacgtccatgtgtggcagattgcccaacgtgactacagctggcaccccacc
acgtctcaggccaggggccccagccctcaggctaacaaggaactgggaaactttttccgg
agcctgtggggaccttatgctggctgggcccaagcagtgagtgtacctaggtttcccctc
ctctctagcccagaccctaaagaacttccccctatccctgacccagtgggcttttccagc
agtctgtccccatggactcttacttcgaccaccccaggtaaccctaatggactctccaac
tag
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