Sciurus carolinensis (gray squirrel): 124971019
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Entry
124971019 CDS
T08117
Name
(RefSeq) cadherin-4 isoform X1
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04514
Cell adhesion molecule (CAM) interaction
ncar04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
124971019
04519 Cadherin signaling
124971019
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ncar04515
]
124971019
Cell adhesion molecules [BR:
ncar04515
]
Cadherins
Major cadherins
124971019
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_pro
CADH_Y-type_LIR
Cadherin_FAT4_N
Ig_CLSTN
F59B103_C
NCMAP
DUF2304
Stevor
Motif
Other DBs
NCBI-GeneID:
124971019
NCBI-ProteinID:
XP_047390654
LinkDB
All DBs
Position
2:complement(1780833..2227480)
Genome browser
AA seq
914 aa
AA seq
DB search
MTAGSGVLLVLLSLSGALRAQEDLTASETCKAGFSEEGYTALISPNILQGERLLKVEFSS
CLGSQGMQYETNSLDFKVRADGTVFATRELRIPSEQVAFTVTARDRRTAEQWDAVVRLLV
AQTWSLHPGHKRGKKKDVTLDPSQPPRDTLRPWPQHQSSGGLRRQKRDWVIPPINVPENS
RGPFPQQLVRIRSDKDNDIPIRYSITGVGADQPPTEVFSIDSMSGRMYVTRPMDREERAS
YHLRAHAVDMNGNKVENPIDLYIYVIDMNDNRPEFLNQVYNGSVDEGSKPGTYVMTVTAN
DADDSATANGMVRYRIVTQTPQSPSQNMFTINSETGDIVTVAAGLDREKVQQYTVIVQAT
DMEGNLNYGLSNTATAIITVTDVNDNPPEFTTSTFAGEVPENRVETVVANLTVMDRDQPH
SANWNAVYRIISGDPSGHFSVRTDPVTNEGMVTVVKAADYELNRAFMLTVMVSNQAALAS
GIQMSFQSTAGVTISVTDVNEAPYFPSNHKLIRLEEGVPAGTALTTFSAVDPDRFMQQAV
RYSKLSDPANWLHINASNGQVTTAAVLDRESLYIRNNVYEATFLAADNGMPPASGTGTLQ
IYLIDINDNAPELLPTEAQVCEKPGLSAINITAADADVDPNVGPYVFELPFVPATVRKNW
TITRLNGDHAQLGLRILYLEAGVYDVPVTVTDSGNPPLSNTSVIKVKVCPCDENGDCTAA
GAVAAAGLGTGAMVAILLCIVILLTMVLLFVVWMKRREKERHTKQLLIDPEDDVRDNILK
YDEEGGGEEDQDYDLSQLQQPEAMEHVLSKAPGVRRVDERPVGAEPQYPVRPVVPHPGDI
GDFITEGLRAADNDPTAPPYDSLLVFDYEGSGSPAGSVSSLGSSSSGDQDYDYLNDWGPR
FRKLADMYGGGQED
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgggctccggcgtgctcctggtgctgctctcgctctccggcgcgctccgggca
caagaggatcttacagccagcgagacctgcaaggctggattctcagaagaaggttacacg
gcattaatctcgccaaatattctgcaaggagagaggctgctcaaagtcgagttcagcagc
tgtctggggagccaggggatgcaatacgagaccaacagcctggacttcaaagtcagggcc
gacgggacagtcttcgccacccgggagctgcgcatcccctccgagcaggtggccttcaca
gtgaccgcacgggaccgccggacagctgagcaatgggatgccgtggtgcggctgctggtg
gcccagacctggtccttgcaccctggacacaagagaggaaagaagaaagacgtgaccctg
gacccctctcagccaccgagggacacgctgcggccgtggccccagcaccagagctccgga
ggactgaggcggcagaagcgggactgggtcatccccccgatcaatgtgcccgagaactcg
cgcgggcccttcccgcagcaactcgtgaggatccggtcagacaaagacaacgacatcccc
attcggtacagcatcaccggcgtgggcgccgaccagccccccacggaggtcttcagcatc
gactccatgtctggccgcatgtacgtcaccaggcccatggaccgggaggagcgagcctct
taccacctgcgagcccacgccgtggacatgaacggcaacaaggtagagaaccccatcgac
ctgtacatctacgtcatcgacatgaacgacaaccgcccggagttcctcaaccaggtctac
aacggctcggtggacgagggctccaagccaggcacctacgtgatgacagtcacggccaac
gacgcagacgacagcgccacagccaacggcatggtgcggtaccgcatcgtgacccagacc
cctcagagcccgtcccagaacatgttcactatcaacagtgagacaggggacattgtgacg
gtggccgcaggcctggaccgcgagaaagtgcagcagtacacggtcatcgtccaggccacc
gacatggaaggcaatcttaactacggactctcaaacacggccacagccatcatcacggtg
acggacgtgaacgacaacccccccgagttcaccacaagcacatttgcaggggaggtcccc
gaaaaccgggtggaaacggtggtcgccaacctgaccgtgatggaccgagaccagccccac
tctgcaaactggaacgcggtctaccgcatcatcagcggagacccctcgggccacttcagc
gtgcgcacggaccccgtcaccaacgagggcatggtcaccgtggtgaaggcggccgactac
gagctgaacagggccttcatgctgacggtgatggtgtccaaccaggcggccctggccagc
gggatccagatgtccttccagtccacagcaggggtgaccatctcagtcactgacgtcaat
gaggccccctacttcccctccaaccacaagctcatccgcctggaggagggcgtgccggct
ggcacggcgctcaccaccttctcggccgtggaccccgaccgcttcatgcagcaggcggtg
aggtactcaaagctgtcggaccccgcaaactggctgcacatcaacgcctccaacggtcag
gtcaccacggccgccgtcctggaccgcgagtccctctacatcagaaacaacgtctacgag
gccaccttcctggcagccgacaatgggatgcccccggccagcggcactgggactctgcag
atctacctcatcgacatcaacgacaacgcccccgagctgctgcccacggaggcgcaggtg
tgcgagaagccgggcctgagcgccatcaacatcaccgcggccgacgcggacgtggacccc
aacgtcggcccctacgtcttcgagctgcccttcgtcccggccaccgtgcgcaagaactgg
accatcacccgcctcaacggtgaccatgcccagctgggcctgcgcatcctgtacctggag
gccggggtgtacgacgtccccgtcaccgtcacggactccgggaaccctccgctctccaac
acgtccgtcatcaaagtcaaggtgtgcccgtgcgacgagaacggcgactgcacggcggcg
ggcgcggtggcggctgcggggctgggcacgggcgccatggtggccatcctcctctgcatc
gtcatcctgctaaccatggtcctgctgttcgtggtgtggatgaagcggcgggagaaggag
cggcacaccaagcagctactcatcgaccccgaggacgacgtgcgggacaacatcctcaag
tacgacgaggagggcggcggcgaggaggaccaggactatgacctcagccaactgcagcag
ccagaagccatggagcacgtgctgagcaaggcccctggagtgaggcgggtggacgagcgg
ccagtgggtgccgagccccagtacccagtccggcctgtggtgccccacccaggtgacatc
ggggatttcatcaccgagggactccgcgcggctgacaatgaccccacggcgcccccctat
gactccctgctggtcttcgactacgaggggagcggctcccccgcgggctccgtcagctcc
ctgggctcctccagctccggggaccaggactacgactacctgaacgactggggtccgcgg
ttcaggaagctggccgacatgtacggaggcggccaggaggactag
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