Sciurus carolinensis (gray squirrel): 124971028
Help
Entry
124971028 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein complementing XP-C cells-like
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
124971028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124971028
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
124971028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
124971028
NCBI-ProteinID:
XP_047390670
LinkDB
All DBs
Position
19:complement(11550239..11579874)
Genome browser
AA seq
928 aa
AA seq
DB search
MARKRRARGELRGREPRGRSAKGKTAAPREEEADVFEDEKPEVPKKSLVSKVSQGRKKRG
RSHPGAAADGPARKKVAKAPVRSADLIVKEEAVSDGEDSRDFSRDFKKAHPKREATVKGS
SSEGEDEEESEEDWEEVEELGEPVPGDVGGSSAFSASVLPAKPVEIEIETPEQAKSRQRS
EKIKLELETYLRRMMKRFNKEVHENTHKVHLLCLLANGFYRNSVCRQPDLLAIGLSIIPT
RFTKVPPQDVDLCFLSNLVKWFIGTFTVNPELSTNEQEGLQATLERRFAIYSARDDEELV
HIFLLILRALQLLTRLVLSLQPIPLKSPVAKGTKLSKERPTERTGGASEASSQVPGTAGT
PKSSPAAGGEAPARGRHQPRARRAEEPAGSGQRTRGERLQRGGEAGGPGTLGLGGRGRRV
ASRVSYKEDSGRXAGRQAVSDFELSSGEARRSSARTPNPALQSEAGPGAPRTKPGSKSDA
APHVGGHSQGPVAASSSPGSKRGHTAPRGAAEAAGVDQWLEVFCERRAAWVSVDCVHGVV
GQPXACYRFASRPLTYVVGIDSDGWVRDVTQRYDPAWMTATRKCRVDPEWWAETLRPYRS
PFVEREKKEDQEFQAKHLDQPLPTAISTYKNHPLYALKRHLLKYQAIYPETAAILGYCRG
EAVYSRDCVHTLHSRDTWLKQARVVRLGXVPYKMXKAISNRARKARLAEPQLQAQKRLGL
FGHWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIXCVQLNLPNLHRVARKLDIDCVQ
AVTGFDFHGGYSHPVTEGYIVCEEFKDVLLTAWENEQALAEKREKERREKRALGNWKLLV
KGLLIRERLKLRYGPRSNEAVAPHADAGGGLSSDEEEGTSSQAEAARILAASWPQNRETA
EEQKPRCLGRTGRARRGAASHLFPFEKM
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcaagcgcagggcgagaggggagctgcggggacgcgaaccgcgcggccggagt
gccaagggcaagaccgcggccccgcgtgaggaggaggcggatgtctttgaagatgagaaa
ccggaagtccccaagaagagccttgtctcaaaagtttcacaaggaaggaagaagagaggc
cgcagtcacccgggggccgcggcagatggtcccgcaaggaagaaagtggccaaggcgcct
gtccgatctgcagacctcatcgtgaaggaggaggccgtcagcgacggggaagattccagg
gacttttcaagggacttcaagaaggcccatccaaagagagaggctaccgtgaagggaagc
agcagtgaaggagaagatgaggaagagagcgaggaggactgggaagaggtggaagaactt
ggtgagcctgtgccgggtgacgtgggaggcagctcggccttctctgcgtctgttctgcct
gcgaagccagtggagatagagatcgaaacgccggagcaggccaaatcgagacagagaagt
gagaagataaaactggagttggagacgtatcttcggaggatgatgaagcgcttcaataaa
gaagttcacgagaacacacacaaggttcacctgctgtgtctgctggcaaatggcttctat
cgaaatagcgtctgcaggcagccagacctgcttgccattggcctctccatcatccccact
cgctttaccaaagtgccaccccaagacgtggacctctgcttcctctcaaacctggtgaag
tggttcattggaacgttcacagtaaacccagaactctccaccaacgagcaagaggggctg
caggcgaccctggaacggaggttcgccatctactccgcgcgcgacgacgaggagctggtc
cacatatttctgttgattctccgggctctgcagctgctgacccggctggtgctctctcta
cagccaatccctctgaagtcacctgtggcaaagggaacgaagctctccaaggagagaccc
acggagcgcactgggggcgcctcagaagcctccagccaggtccccggaaccgcaggcacc
ccgaagtccagcccagcagccggaggggaggcgcctgcccggggccgccaccagccccgc
gcccggagggcggaggagccggcgggcagcggacagcggacccgcggggagcgcctccag
cggggaggagaggcgggcggcccggggacgctcggcctcgggggccgtgggcgccgggtg
gcctccagggtctcgtacaaggaggacagcgggaggtgagcaggccggcaagcggtttct
gactttgagctttccagcggggaggcccggcgatcctccgcgaggactccgaacccggcc
ctccaaagcgaggcgggccccggcgcccccaggacaaagcccgggtccaagagcgacgca
gcaccccacgtgggaggccactcgcagggccctgtggcggcctcaagctccccgggcagc
aagaggggccacacggcgcccaggggcgcggcggaggcggccggggtggaccagtggctg
gaggtgttctgcgagcgccgggccgcctgggtgagcgtggactgcgtgcacggcgtggtg
ggccagcccncggcctgctacaggttcgcctccaggcccctcacctacgtcgtgggcatc
gacagtgacggctgggttcgcgacgtcactcagaggtacgacccggcctggatgacagcg
acgcgcaagtgccgggtggatcctgagtggtgggccgagaccctgaggccctaccggagc
ccgtttgtggaaagggagaagaaagaggatcaggagtttcaggcaaagcacctggaccag
cccttgcctacggccattagcacgtacaagaaccaccctctctacgccctcaagcgacac
ctcctgaagtaccaggccatctatcctgagacggcggccatccttgggtattgtcgcggg
gaggctgtctactccagggactgcgtgcacacgctgcactccagggacacgtggctgaag
caggccagggtggtgcggctcgggnaagtgccctacaagatgtgaaaggctatttccaac
cgggcccggaaagcccggctcgccgagccccagctgcaggcccagaaacgactgggcctg
tttggccactggcagacggaggagtaccagcccccggtggcggtggacgggaaggtgccc
cggaatgaatttgggaacgtgtacctcttcctgcccagcatgatgcccatcngctgcgtc
cagctgaatctgcccaacctgcaccgcgtggcccgcaagctggacatcgactgcgtccag
gctgtcacgggcttcgacttccacggcggctactcgcatcccgtaactgaggggtacatc
gtgtgcgaggagttcaaagatgtgctcctgacggcctgggagaacgagcaggcgctcgcg
gagaagcgggagaaggagaggagggagaagcgggctctcgggaactggaagctgctggtc
aaaggcctgctcatccgggagaggctgaagctcagatacgggccaaggtcaaacgaggca
gtagctccccacgcagacgcaggcggcgggctctcttctgacgaggaggaggggaccagt
tcccaagcagaagccgccaggatcctggctgcctcctggccccagaaccgagagactgca
gaggagcagaagcccaggtgcctcgggaggaccggaagggcgaggaggggggccgcctcc
cacctgttcccgtttgagaagatgtga
DBGET
integrated database retrieval system
