Sciurus carolinensis (gray squirrel): 124971392
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Entry
124971392 CDS
T08117
Name
(RefSeq) probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ncar01002
]
124971392
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124971392
Enzymes [BR:
ncar01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
124971392
Peptidases and inhibitors [BR:
ncar01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
124971392
Ubiquitin system [BR:
ncar04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
124971392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
124971392
NCBI-ProteinID:
XP_047391123
LinkDB
All DBs
Position
X:complement(5861234..5994868)
Genome browser
AA seq
2560 aa
AA seq
DB search
MSMTATTRGSPVGGNDSQGQTPDGQSQPPFQQNQISSHDYSNENSPATPPDEQGQGDAPP
QHEEEEPIFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLSKKGLDVKSEACQR
FFRDGLTVSFSKILMDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLELLALAL
NPHCKFHVYNGTRPCESVSSSVQLPEDELFAHSPDPRSPKGWLVDLINKFGTINGFQILH
DRFINGSALNVQIIAALIKPFGQCYEFLSQHTLKKYFIPVIEIVPQLLENLTDEELKKEA
KNEAKNDALSMIIKSLKNLASRIPGQEETVKHLEIFRLKMILRLLQISSFNGKMNALNEI
NKVISSVSYYTHRHGNSEEEEWLTADRMAEWIQQNNILSIVLRDSLHQPQYVEKLEKILR
FVIKEKALTLQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKESWTN
ASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDLALSAHIKILDY
SCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLSSSHFSQAQRS
PHVFYRHDLINQLQHNYALVTLVAENLAAYMKHIELYARDHETYDPQTVRLGSRYSHVQE
VQERLNFLRFLLKDGQLWLCAPQAKQIWKCLAQNAVYLSDREACFKWYSKLMGDEPDLDP
DINKDFFESNVLQLDPSLLTENGIKCFERFFKAVNCREGKLIAKRRAYMMDDLELIGLDY
LWRVVIQSNDDIASRAIDLLKEIYTNLGPRLQVNQVVIHEDFIQSCFDRLKASYDTLSVL
DGDKDNINCARQEAIRMVRVLTVLREYINECDNDYHGERMILPMSRAFRGKHLSITVRFP
NQGRQVDDLDILSHTNDTVGSVRRSILNRIKANVAHTKIELFVGGELIDSEDDRKLIGQL
NLKDKSLITAKLTQINSNLPSSPDSSSDSSSGSPGNHCNHYSNSPNPEVESCLPGVIMSL
HPRYISFLWQVADLGCSLNMPFLRDGARVLMKLMPPDSTTIEKLRAICLNQANLGESNIG
PSLDSLFFGPSASQVLYLTEVVYTLLMPAGAPLTDMSSDFQFHFLKSGGLPLVLSMLIRS
NFLPNTDTETRRGAYFNALKIAKLLLTAIGYGHVRAVAEACQPVVDGAEPVTPINQVTHD
QAVVLQSALQSIPNPSSECMLRNVSIRLAQQISDEASRYMPDTCVIRGIQKIIWASGCGA
LELVFSPNEEITKIYEMTASTASEPEVEDEQVCCEALEVMTLCFALIPTALDALSKEKAW
QTFIIDLLLHCPSKIVRQLAQEQFFLMCTRCCMGHRPLLFFITLLFTILGSTARERGKYS
GDYFTLLRHLLNYAYNSSISVPNAEVLLNNEIDWLKRIRDNVKNTGETGIEEPILEGHLG
VTKELLAFQTSEKKYYIGCEKGGANLVKELIDDFIFPASKAYLQYMRNGELPAKQTIPVC
SSPSTINAGFELLVALAVGCVRNLKQIVDCLTEMYYIGTAITTCEALTEWEYLPPIGPRP
PEGFVGLKNAGATCYMNSVIQQLYMIPSIRNSILKVEGTGSDTDDDMFGDEKQDSENNVD
PRDDVFGYPHQFEDKPALRKTEDRKEYNIGVLRHLQVIFGHLAASQLQYYVPRGFWKQFR
LWGEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQGCPHRYE
CEESFTTLNIDIRNHQNLLDSLEQYVKGDLLEGANAYRCEKCDKKVDTVKRLLIKKLPPV
LAIQLKRFDYDWERECAIKFNDYFEFPRELDMDPYTVAGVAKLEEDNINSESQLIEQKEQ
SESEIARNTKYRLVGVLVHSGQASGGHYYSYIIQRNGKNGERDHWYKFDDGDVTECKMDD
DEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERLDTVDEDDKMIRYISEL
TVTRSHQIVMSPAIERSVWKQNVQFMHNRMQYSLEYFQFVKKLLTCNAIYLNPAPGQDHL
LPEAEEITMISIQLAARFLFTTGFHTKKIVRGPASDWYDALCILLRHSKNVRFWFAHNVL
FNVSNRFSEYLLECPSAEVRGVFAKLIVFIAHFSLEDGSSPSPFASPGPPCSQTCDNLSL
SDHLLKAVLNLLRREVSEYGRHLQQYFNLFVMYANLGIAEKTQLLKLNVPATFMLVSLDE
GPGPPIKYQYAELGKLYSVVSQLIRCCSVSSRTQSSINGNPPLPNPFGDPNLSQPIMPIQ
QNVADILFMRISYVKKIIEDCSNSEETIRLLRFCSWENPQFSSTVLSELLWQVAYSYTYE
LRPYLDLLLQILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAYQCIKCMV
ALFNNCPVAYQILQGNGDLKRKWTWAVEWLGDELERRPYTGNPQFTYNNWSPPVQSNETS
NGYFLERSHSARMTLTKACELCPEEYPDDQDAPDEHESSPPEDVTLYPHSPGSQYQQNNV
HGQPYTGPAAHHLNNPQKSGRIQENYEGSEEVSSPQTKDQ
NT seq
7683 nt
NT seq
+upstream
nt +downstream
nt
atgagtatgacagccacaactcgtggctctccagtgggagggaatgacagccagggccaa
actcctgatggacagtctcagcctcccttccaacagaaccagatttcatcacatgattat
tccaatgagaattccccagcaactcctccagatgaacaaggtcaaggtgatgctccacca
cagcatgaagaggaggaacctatatttccacatactgacctagcaaagttggatgacatg
atcaacaggcctcgatgggtggttcctgttttgcctaaaggggaattagaagtgctttta
gaagctgctattgatcttagtaaaaaaggccttgatgttaaaagtgaggcttgtcagcgt
ttctttcgagatggactaacagtatctttcagtaaaatccttatggatgaggcagtgagt
ggatggaagtttgaaattcataggtgtattattaacaatacccatcgcctagtggagctt
tgtgttgccaagttgtcccaagactggtttccacttctagaacttcttgccctggcttta
aatcctcattgcaaatttcatgtctacaatggtacacgtccatgtgaatcagtttcctca
agtgttcagttgcctgaagatgaactctttgcccattctccagatccacgatcaccaaaa
ggttggctagtggatctcattaataaatttggcacaataaatggtttccagatattgcat
gatcgctttattaatggatctgctttaaacgttcaaataattgcagctcttattaaacca
tttggacagtgttatgaatttcttagtcaacatacattgaaaaaatacttcattccagtt
atagaaatagttccccagttattagaaaatttaactgatgaagaactgaaaaaagaagca
aagaatgaagcaaaaaatgatgccctttcaatgattattaaatctctgaagaatttagct
tcaaggattccaggacaagaagaaactgtaaaacatttagaaatttttaggttaaaaatg
atacttagattattacagatttcttcttttaatggaaaaatgaatgcattgaatgaaata
aataaggtgatatctagtgtatcatattacacacatcgacatggtaattctgaggaggaa
gagtggctgacagctgatcgaatggcagaatggatacagcaaaacaatatcctatccata
gtcttgcgagatagtcttcatcaaccacagtatgtagaaaagctagagaagattcttcgt
tttgtaattaaagaaaaagctcttacgttacaggatcttgataatatctgggcagcacag
gcaggaaaacatgaagccattgtgaagaatgtacatgatctactagcaaagttggcttgg
gatttttctcctgaacagcttgatcatctttttgattgctttaaggaaagttggacaaat
gcaagtaaaaaacagcgtgagaagctacttgaattgatacgtcgtcttgcagaagatgat
aaagatggtgtgatggcacacaaagttttgaatcttctttggaatctggctcatagtgat
gatgtgcctgtagatatcatggacctagctctcagtgcccacataaaaatactagattat
agttgttctcaggatcgagacacacaaaagatccagtggatagatcgctttatagaagaa
ctccgcacgaatgacaagtgggtaattcctgccctgaaacaaataagagagatttgtagt
ttgtttggtgaagcacctcaaaatttgagttcttctcatttcagtcaagctcagcgaagt
cctcatgttttttatcgccatgatttaatcaaccaacttcagcacaattatgccttagtt
actttagtagcagagaatcttgcagcttacatgaagcacatagaactatacgctagagac
catgaaacctatgacccacaaactgtgagacttggaagtagatatagtcatgttcaagaa
gtccaagaacgacttaacttccttagatttttattaaaggatggccagctatggctctgt
gctccccaggcaaagcaaatatggaagtgcttagcacagaatgcagtttatcttagtgat
cgtgaagcctgttttaagtggtattccaaattaatgggggatgaaccagacttagatcct
gatatcaataaggacttctttgaaagcaatgtgcttcaacttgatccttctttattaacg
gaaaatggaataaagtgttttgaaagattcttcaaagctgttaattgtcgagaaggaaaa
ctaatagcaaaaagaagagcctatatgatggatgacctagaattaataggattggactac
ctttggagggttgtgattcagagtaatgatgatattgccagcagagctatagatcttctt
aaagaaatatatacaaaccttggccccagattacaggtcaatcaggtggttatacacgaa
gacttcattcaatcttgttttgatcgattgaaagcctcttatgatacattaagtgttttg
gatggtgacaaagacaatattaattgtgcaagacaggaagccattcgaatggttcgagta
ttaactgtcctaagggagtacataaatgaatgtgataacgattatcatggggaaagaatg
attctacctatgtcaagagcatttcgtggtaaacacctctctatcacagttcgatttcca
aaccaaggcagacaagttgatgatttggatatattgtctcatacaaatgatacagttggt
tcagtacgacgaagtattctcaatcgtattaaagccaatgtagcccatacaaaaattgaa
ctgtttgtaggtggtgaactgatagattctgaagatgatagaaagctaattggacaatta
aacctaaaagataaatcactaattacagctaaacttacacaaataaactccaacctgcct
tcaagtcctgatagctcttctgattcttcatctggatcccctggaaaccattgtaatcac
tacagtaatagtcccaatccagaagtagaaagttgtttgcctggggtgataatgtcgctg
catcccaggtatatatctttcctttggcaagttgcagacttaggatgcagcctgaatatg
ccttttcttagagatggagcaagagtacttatgaaactgatgccaccagatagcacaact
atagaaaaattaagagctatttgtttgaaccaagcaaatcttggagaaagcaacattggt
ccatctcttgactcactcttctttggtccttctgcctcccaagttctatacctgacagag
gtagtttatactttgttaatgcctgctggtgcacctctgactgatatgtcttcagatttt
cagtttcacttcttgaaaagtggtggcttaccccttgtactgagtatgctaataagaagt
aacttcttaccaaatacagatacagaaactcgtagaggtgcttacttcaatgcccttaaa
atagccaaactgttattaactgccattggctatggccatgttcgagctgtagcagaagct
tgtcaaccagttgtagatggtgcagaacctgtaacaccgataaatcaagttactcatgat
caagctgtggtgctacaaagtgcccttcagagcattcctaatccttcatctgagtgcatg
cttagaaatgtatcaatacgtcttgctcagcaaatatctgatgaggcctcaagatatatg
cctgatacttgtgtaattagaggtatacagaaaataatttgggcatcaggatgtggagca
ttagagctagtgtttagcccaaatgaagaaatcactaaaatttatgagatgactgccagt
acagccagtgagccagaagtggaagatgaacaggtttgctgtgaagccttggaagtgatg
acgttatgttttgctttaattccaacagccttagatgcacttagtaaagaaaaagcctgg
cagacatttatcattgacttactattacactgtcccagcaaaattgtccgtcagttggca
caggagcagttctttttaatgtgtaccagatgttgcatgggacacagacctctacttttc
ttcattaccctactctttaccattttggggagtacagcaagagagagaggtaaatactca
ggtgattatttcacacttttacggcatcttctcaattatgcttacaacagcagtattagc
gtgcccaatgctgaagttcttctcaacaatgaaattgattggctcaaaaggattagagat
aatgttaaaaacacaggtgaaacaggcattgaagaacctattttggaaggccaccttgga
gtaacaaaagagttactggcctttcaaacttctgaaaaaaagtattatattggttgtgaa
aaaggaggtgctaatcttgttaaagaattaattgatgatttcatctttcctgcatccaaa
gcttatctgcaatatatgagaaatggagaactaccagcaaagcagactattcctgtttgt
agttcaccatctaccatcaatgctggatttgaactccttgtagcattagctgttggctgt
gtaagaaatctcaaacagatagttgactgtttgactgaaatgtattacattggaacagca
ataactacttgtgaagcacttactgaatgggaatacctgccacctattggacctcggcca
ccagaaggatttgtaggactcaaaaatgcgggtgcaacttgttatatgaattctgtgatt
cagcagctatacatgattccttccatcagaaacagtattcttaaagttgaaggcacaggt
agtgatacagatgatgatatgttcggggatgagaagcaggacagtgagaataatgttgat
cctcgagatgatgtatttggatatcctcatcagtttgaagacaaaccagcattaagaaag
acagaagataggaaagaatataatattggtgtcttacgacaccttcaggtcatctttggt
catttggctgcttcccaactacaatactatgtccccagaggattttggaaacagttcagg
ctttggggtgaacctgttaatctccgtgagcaacatgatgccttagaattttttaattct
ttggtggatagtttagatgaagctttaaaagccttaggacatccagctatgttgagtaaa
gtcctaggaggttcatttgctgatcagaaaatttgtcaaggctgtccacataggtatgag
tgtgaagaatcttttacaactttgaatattgacattagaaatcaccaaaatcttcttgat
tctttggaacagtatgtcaaaggagatttgttagaaggagcaaatgcatatcgctgtgaa
aaatgtgataaaaaggttgatacagtaaaacgcttgctaatcaaaaaattgcctcctgtt
cttgctatccaactgaaacggtttgactatgattgggagagagaatgtgcaatcaaattc
aatgattattttgaatttccacgagaactagatatggatccttacacagtagcaggtgtt
gcaaagctggaagaagataatataaactcagagagtcagttgattgaacagaaggagcag
tctgaaagtgagattgcaagaaacacaaaatatagacttgtaggtgtgcttgtacacagc
ggtcaagcaagtggtggccattattattcttatatcattcaaaggaatggcaaaaatggt
gagagagatcactggtataaatttgatgatggagatgtgacagaatgtaaaatggatgat
gatgaagaaatgaaaaatcagtgttttggtggagaatatatgggagaagtatttgatcat
atgatgaagcgtatgtcatacaggcggcagaaacggtggtggaatgcttacatacttttt
tatgagcgactggacacagttgatgaagatgataaaatgataagatatatctcagagtta
actgtcacaagatcccatcagattgttatgtcaccagctattgagagaagcgtatggaaa
caaaatgtccagttcatgcataaccggatgcagtatagtttagaatattttcagtttgta
aaaaaactgcttacctgtaatgctatttacttaaatcctgctccaggacaagatcacttg
ttgcctgaagccgaagagataactatgattagcattcagcttgctgctagattcctcttc
accactggatttcataccaagaaaatagttcgtggccctgctagtgactggtatgatgct
ttgtgcattctcctccgtcacagcaagaatgtacgtttttggtttgctcataatgttctt
tttaatgtatcgaatcgtttctctgaataccttctggagtgccctagtgcagaagtgagg
ggtgtgtttgcaaaacttatagtatttattgcacatttttccttggaagatgggtcttct
ccttcaccttttgcatctcctggaccaccttgtagtcagacatgtgataacttgagcttg
agtgaccacttactaaaagcagtattaaatctcctgagaagggaagtttcagaatatggg
cgtcatttacaacaatatttcaatttgtttgtaatgtatgccaatttaggtattgcagaa
aagacacagcttctgaaattgaacgtacctgccacctttatgcttgtgtctttagatgaa
ggaccaggtcctccaatcaaataccaatatgctgaattaggcaagttatactcagtagta
tctcagctgatacgctgttgcagtgtttcatcaagaacccagtcttcgattaatggtaat
cccccccttcccaatccttttggagaccctaatttatcacaacccataatgccaattcag
cagaatgtggcagatattttatttatgagaataagttatgtgaagaaaattattgaagac
tgcagtaactcagaagagaccatcaggttacttcggttctgctcctgggagaatcctcag
ttctcatctactgtcctgagtgaacttctctggcaggttgcatattcatatacatatgaa
cttcggccatatttggatctacttttgcagattttactgattgaggactcctggcagact
cacagaattcataatgcacttaaaggaattccagatgaccgtgatgggctgttcgataca
atccagcgctctaagaatcactatcaaaaaagagcatatcagtgtataaaatgtatggta
gctctctttaacaattgtcctgttgcttaccaaattttacagggtaatggagaccttaaa
agaaaatggacctgggcagtggaatggcttggagatgaacttgaaagaagaccatatact
ggcaatcctcagttcacttacaacaattggtctccaccagtacaaagcaatgagacatca
aatggttatttcttagaaaggtcacatagtgctagaatgacacttacaaaagcttgtgaa
ctctgtccagaagagtacccagatgaccaagatgccccagatgaacatgagtcatctcca
ccagaagatgtaacattgtatcctcattcacctgggtctcagtatcaacagaataatgta
catggacaaccatatacaggaccagcagctcatcacttgaacaaccctcagaaaagtggc
cgcatacaagaaaattatgaaggcagtgaagaagtatcctcacctcaaacaaaggatcag
tga
DBGET
integrated database retrieval system
