Sciurus carolinensis (gray squirrel): 124971474
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Entry
124971474 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 8-like
KO
K11804
DDB1- and CUL4-associated factor 8
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124971474
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
124971474
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GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
124971474
NCBI-ProteinID:
XP_047391193
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Position
X:48293692..48306099
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AA seq
576 aa
AA seq
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MSGPPKDHLLNSIGEETSGTEAGRDTHSDFERKPSKLTTKLTGDGVPIHVSTESEGADPE
SSSKTNDFHTREDFDHFVSSEESRFHHHLEEGETEKEDEQQFQVCVQYSENNSEDEDQVL
EKWMNSETSALPRPHWQVLPALRERQLGSSSHFIHEACGSEIFVQRFSLQYCLEGHLGCM
NTVHFNQRGTLLASGSDDLRVIVWDWIGKRPVLDFESGHKNNVFQAKFFPNCGDSILAMC
SRDGQVAELSAPVCGKNTKCVXQHKGASHKLALEPDSPCKFLTSGEDAVVYTIDLRQGQP
ASKMVVTKEKEXKVGLYTIHVNPSNTYQFAVGGRDQFVRIYDQRKIDENENNGILKKFCP
HHLINCDTKINITSLVYSHEGTELLVSYSGEDIYLFNSSDSDGAQYVKRYKGHRNDATVK
GVNFYGPRSEFVMSDRDCGHIFLWEKASCQIIQFMVGDKGGTVKCLEAHPHLSVMATSGL
DLDAKIWAPTTTVSTELTRLKDVLKQNKQKRDNLHHHDLFDSHTLWFLTSHLTQRNYYQH
WGSPGFQGMDAYFLESTSTSDASEEESQDRVQCCPS
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgtccgggccacccaaagaccatttgttgaattctataggcgaggagacatctggcacg
gaggcagggagagatacacactcagactttgagagaaagccttcaaaactgactacgaaa
ttgactggagatggtgtccccatccatgtcagcacagaaagtgaaggagcagacccagaa
agttcaagtaaaaccaatgattttcacaccagggaggactttgaccatttcgtcagcagt
gaggaaagccggttccaccaccacttagaggaaggagagacagagaaggaagatgaacaa
cagtttcaggtatgtgtacagtacagtgaaaacaatagtgaggatgaggatcaggtccta
gagaagtggatgaattcagagacatctgccctcccacgacctcactggcaagtccttcct
gcacttcgggagcggcagctgggttcaagttctcattttatacatgaagcatgtggatca
gaaatctttgtgcagcgtttcagcttacagtattgtcttgaaggccatttaggttgtatg
aacactgtacattttaatcagcgtggcaccttgttggccagtggtagtgatgacttgagg
gtgatagtgtgggactggatagggaagcggccagtactggactttgagagtggccacaaa
aataatgtcttccaggctaagttttttcctaattgtggtgattccatcctggccatgtgt
tcccgtgatggccaggtagctgaactatctgctccagtatgtgggaagaatactaagtgt
gtgngccaacataagggagcttctcacaagttggctctggagccagactccccatgtaag
ttcctaacttcaggtgaagatgctgttgtttataccattgatctcagacaagggcagcca
gcttcaaaaatggtggtaacaaaagagaaagagtagaaagtgggactatatacaatccat
gtgaatcctagcaatacctatcagtttgcagtgggtggacgagatcagtttgtgaggatt
tatgaccagagaaaaattgatgagaatgagaacaatggcatactcaagaagttctgtcct
catcacctgatcaactgtgataccaaaataaatatcaccagtcttgtgtacagtcatgaa
ggcacagagctcctagtgagttacagcggtgaagatatttacctcttcaactcctctgac
agtgatggagctcaatatgttaagagatataagggccacagaaatgatgccacagtgaaa
ggtgtgaatttctatggccccagaagtgagtttgtgatgagtgatagggattgtgggcat
atctttctctgggagaaagcatcttgccagatcattcagttcatggtgggagacaagggc
ggtacagtgaagtgtcttgaagcccatcctcacctatctgtaatggcaactagtggcctg
gaccttgatgctaagatctgggcacccacaaccacagtttccactgagcttaccaggtta
aaggatgtgcttaagcagaacaagcagaaaagagataacttgcaccaccatgacctgttt
gatagtcacacgctttggttcctcacgagtcacctgacacagagaaattattaccagcac
tggggaagtcctggctttcaaggcatggatgcatacttccttgagtctaccagcacctca
gatgcttctgaggaagaaagccaagatcgagtgcagtgctgtccatcctga
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