Sciurus carolinensis (gray squirrel): 124971717
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Entry
124971717 CDS
T08117
Name
(RefSeq) transcription initiation factor TFIID subunit 1 isoform X1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124971717
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ncar01001
]
124971717
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124971717
03036 Chromosome and associated proteins [BR:
ncar03036
]
124971717
Enzymes [BR:
ncar01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
124971717
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
124971717
Protein kinases [BR:
ncar01001
]
Serine/threonine kinases: Other
TAF1 family
124971717
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124971717
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
124971717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
zf-CCHC_6
Cac1_C
Opi1
Ribosomal_L44
Zn_ribbon_12
Motif
Other DBs
NCBI-GeneID:
124971717
NCBI-ProteinID:
XP_047391318
LinkDB
All DBs
Position
X:54537966..54619241
Genome browser
AA seq
1928 aa
AA seq
DB search
MGPGLDLLLSAVAAGSTAAIMSDTDSDEDSAGGGPFSLTGFLFGNINGAGQLEGENVLDD
ECKKHLAGLGALGLGNLITELTANEELTGTDGALVNDEGWIRSTEDAVDYSDINEVAEDE
SRRYQQTMGSLQPLCHSDYDEDDYDADCEDIDCKLMPPPPPPPGPVKKDKDQDAISGVSE
DGEGIILPSIIAPSSLASEKVDFSSSSDSESEMGPQEATQAECEDGKLTLPLAGIMQHDA
TKLLPSVTELFPEFRPGKVLRFLRLFGPGKNVPSVWRSARRKRKKKHRELIQEEQIQEVE
CSVESEVIQRSLWNYDYAPPPPPEQCLSDDEITMMAPVESKFSQSTGDIDKVTDTKPRVA
EWRYGPARLWYDMLSVPEDGSGFDYGFKLRKTEHEPVIKCRMMEEFRKLEESNGTDLLAD
ENFLMVTQLHWEDDIIWDGEDVKHKGTKPQRASLAGWLPSSMTRNAMAYNVQQGFTATLD
DDKPWYSIFPIDNEDLVYGRWEDNIIWDAQAMPRLLEPPVLTLDPNDENLILEIPDEKEE
TTSNSPSKESKKESSLKKSRILLGKTGVIKEEPQQNMSQPEVKDPWNLSNDEYYYPKQQG
LRGTFGGNIIQHSIPAVELRQPFFPTHMGPIKLRQFHRPPLKKYSFGALSQPGPHSVQPL
LKHIKKKAKMREQERQASGGGEMFFMRTPQDLTGKDGDLILAEYSEENGPLMMQVGMATK
IKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQAFENNLFRAPIYLHKMPE
TDFLIIRTRQGYYIRELVDIFVVGQQCPLFEVPGPNSKRANTHIRDFLQVFIYRLFWKSK
DRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAM
VSPEQCCAYYSMIAAEQRLKDAGYGEKSFFAPEEENEEDFQMKIDDEVRTAPWNTTRAFI
AAMKGKCLLEVTGVADPTGCGEGFSYVKIPNKPTQQKDDKEPQPVKKTVTGTDADLRRLS
LKNAKQLLRKFGVPEEEIKKLSRWEVIDVVRTMSTEQARSGEGPMSKFARGSRFSVAEHQ
ERYKEECQRIFDLQNKVLSSTEILSTDTDSSSAEDSDFEEMGKNIENMLQNKKTSSQLSR
EREEQERKELQRMLLAAGSAASGNNHRDDDTASVTSLNSSATGRCLKIYRTFRDEEGKEY
VRCETVRKPAVIDAYVRIRTTKDEEFIRKFALFDEQHREEMRKERRRIQEQLRRLKRNQE
KEKLKGPPEKKPKKMKERPDLKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAMTEEQ
EEELEKTVIHNDNEELIKVEGTKIVLGKQLIESADEVRRKSLVLKFPKQQLPPKKKRRVG
TTVHCDYLNRPHKSIHRRRTDPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYK
IITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDE
KLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPD
YYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNV
CYQTLTEYDEHLTQLEKDICTAKEAALEEAELESLDPMTPGPYTPQAKPPDLYDTNTSLS
MSRDASVFQDESNMSVLDIPTATPEKQVTQMRQGRGRLGEEDSDVDIEGYDDEEEDGKPK
TPAPEGEDGDGDLADEEEGTVQQPQASVLYEDLLMSEGEDDEEDAGSDEEGDNPFSAIQL
SESGSDSDVASGGIRPKQPRLLQENTRMGMENEESMMSYEGDGGEASHGLEDSNISYGSY
EEPDPKSNTQDTSFSSIGGYEVSEEEEDEEEEQRSGPSVLSQVHLSEDEEDSEDFHSIAG
DSDLDSDE
NT seq
5787 nt
NT seq
+upstream
nt +downstream
nt
atgggacctggcttggatttgctgctgtccgcagtcgctgccggcagtactgccgccatc
atgtccgacacggatagcgacgaagattctgctggaggcggcccattttctttaaccggt
ttccttttcggcaacatcaatggagctgggcagctggagggggaaaacgtcttggatgat
gagtgtaagaagcacctggcaggcttgggggctttgggtctgggcaacctgatcactgaa
ctcactgcaaatgaagaattgactgggactgacggtgccttggtaaatgatgaaggttgg
attaggagtacagaagatgctgtggactattcagacatcaatgaggtggcagaagatgaa
agccgaagatatcagcagacaatggggagcttgcagcccctttgccactcagattatgat
gaagatgactatgacgctgattgtgaagacattgattgcaagttgatgcctcctccacct
ccacccccaggaccagtgaagaaagataaggaccaggacgctattagcggtgtgtctgaa
gatggagaaggcatcatcttgccctccatcattgccccttcctctttggcctcagagaaa
gtggacttcagtagttcctctgactcagaatctgagatgggacctcaggaagcaacacag
gcagagtgcgaggatggaaagctgaccttaccattggctgggattatgcagcatgatgcc
accaagctgttgccaagtgtcacagaactttttccagagtttcggcctggaaaggtgtta
cgcttcttacgtctttttggaccagggaagaacgtcccatcagtttggcggagtgctcgg
agaaagagaaaaaagaagcatcgggaactgatacaagaagaacagatccaggaagtggag
tgttcagtagaatcagaagtcatccagaggtctttgtggaactacgactatgctccacca
ccacctccagagcagtgtctctctgatgatgaaatcacaatgatggctcctgtggagtcc
aagttctcccagtcaactggagatatagataaagtgacagataccaaaccaagagtggct
gagtggcgttatgggcccgcccgactgtggtatgatatgctgagtgtccctgaagatggc
agtggatttgactatggcttcaagttgagaaagactgaacatgaacctgtgataaaatgt
agaatgatggaggaatttaggaaacttgaggaaagcaatggcaccgatcttctggctgat
gaaaacttcctgatggtgacacagctgcattgggaggatgatatcatctgggatggggag
gatgtcaaacacaaagggacaaaacctcagcgtgcaagcctggcaggctggcttccttcc
agtatgactaggaatgccatggcttacaatgttcagcaaggttttacagctactctggat
gatgacaaaccttggtattccattttccccattgataatgaggatctggtgtatggacgc
tgggaggacaatatcatttgggatgctcaggccatgccccgactgttggagcctcctgtt
ttgacacttgatcccaatgatgaaaacctaattttggagattcctgatgagaaagaagag
actacttctaattctccttctaaggagagtaagaaagagtcatctctaaagaagagtcga
attctcttagggaaaacaggagtcatcaaggaagaaccacaacagaacatgtctcagcca
gaagtgaaagatccgtggaatctctccaatgatgagtattattaccccaagcaacagggt
cttcgaggtactttcggagggaatattattcagcactctattcctgctgtggaattacgg
cagccattctttcccacccacatgggccctatcaagcttcggcagtttcatcgccctcct
ctgaaaaagtattcctttggggcattatctcagccaggtccccactcagtccagcctttg
ctaaaacacatcaaaaagaaggccaagatgagagaacaagagaggcaagcttcaggtggt
ggagagatgttttttatgcgcacacctcaggacctcacaggcaaagatggagatcttatt
cttgcagaatacagtgaggaaaatgggcctttaatgatgcaagttggcatggcaaccaag
ataaaaaactattacaaacggaaacctggaaaagatcctggagccccagattgtaaatat
ggggaaactgtttactgccatacatctccttttctgggctctctccatcctggccaatta
ctacaggcatttgagaacaacctttttcgtgctccaatttatcttcataagatgccagaa
actgacttcctgatcattcggacaagacagggttactatattcgggaattagtagatatt
tttgtggttggccagcagtgtcccttgtttgaagttcctgggcctaactccaaaagggcc
aatacgcatattcgagactttctacaggtttttatttaccgcctcttttggaagagtaaa
gatcggcctcggaggatccgaatggaagatataaaaaaagcctttccttcccattcagaa
agcagcatccggaagagattaaagctctgtgctgacttcaaacgcacagggatggattca
aattggtgggtactgaagtctgattttcgtttaccaactgaagaggagatcagagccatg
gtatcaccagagcagtgctgtgcttattatagcatgatagctgcagagcagcgactgaag
gatgctggctatggcgagaagtccttttttgcgccagaagaagaaaatgaggaagatttc
cagatgaagattgatgatgaagttcgcactgctccttggaataccacaagagcattcatt
gctgccatgaagggcaaatgtctcctggaggtgactggggtggccgatcccacaggttgt
ggtgaaggattctcttatgtgaagattccaaacaaaccaacacagcagaaggatgataag
gagcctcagccagtgaagaagacagtgacaggaacagatgcagaccttcgtcgcctttct
ctgaaaaatgccaagcaacttctacgtaaatttggtgtgcctgaagaagagattaagaag
ttatcccgctgggaagtgatcgacgtggtacgcacaatgtcaacagaacaggcccgctct
ggagaggggcccatgagtaaatttgcccgtggatcaaggttttctgtggctgagcatcaa
gaacgttacaaagaggaatgtcagcgcatctttgacctacagaacaaggttttgtcatca
actgaaatcttatcaactgacacggacagtagctcagctgaagacagtgactttgaagaa
atgggaaagaatattgagaacatgttacagaacaagaaaaccagctctcaactgtcacgt
gagcgggaggagcaggagcggaaggaactacagcggatgctactggcagcaggctcagca
gcatcaggaaacaatcacagagatgatgacactgcttctgtgactagtcttaactcttct
gccactggccgctgtctcaagatttatcgcacatttcgagatgaagaggggaaagagtat
gttcgctgtgagacagtccgaaaaccagctgtcattgatgcctatgtgcgcatacggacc
acaaaagatgaggaattcattcgaaaatttgccctttttgatgaacagcatcgagaagag
atgcgaaaagaacggcggaggattcaagagcaactgagaaggcttaagcggaaccaagaa
aaggagaagcttaagggacctcctgagaagaagcccaaaaaaatgaaggagcgtcctgac
ctaaaactgaaatgtggagcatgtggtgccattgggcacatgaggacaaataaattctgc
cccctttattatcaaacaaatgctccaccttccaaccctgttgccatgacagaggagcag
gaagaggagttggaaaagacagtcattcataatgataatgaagaacttatcaaagtggaa
ggtaccaagatagtcttggggaagcagttaattgaaagtgcagatgaggttcgcagaaaa
tctctggttctcaagttccctaaacagcaacttcctcccaaaaagaaacgacgagttgga
accactgttcactgtgactatttgaatagacctcataagtccatccaccggcgccggaca
gaccctatggtgaccctgtcatctatcttggagtctatcatcaatgacatgagagatctt
ccaaacacataccctttccacactccagttaatgcaaaagttgtaaaggactactacaaa
atcatcactcgaccaatggacctacaaacactccgtgaaaatgtgcgcaagcgcctctat
ccgtctcgggaagagttcagagaacatttggagctaattgtaaaaaatagtgcaacctat
aatggtccaaagcactcactgacccagatctctcaatccatgctggatctctgtgatgaa
aaactcaaagagaaagaagataaattggctcgtttagagaaagctatcaatcccttgctt
gatgatgatgatcaagtggcattttccttcattctagacaacattgtcacccaaaaaatg
atggcagttccagattcctggccatttcatcacccagttaataagaagtttgttccagat
tattacaaagtgattgttaatccaatggacttagagactatacgtaagaatatctccaag
cacaagtaccagagtcgggagagctttctagatgatgtaaaccttattctggccaacagt
gttaagtacaatgggcctgagagtcagtatactaagactgctcaggagattgtgaatgtc
tgttaccagactttgactgagtatgatgagcatttgactcaacttgagaaggatatttgt
acagctaaagaagcagctttggaagaagcggaattagaaagcctagacccaatgacccca
gggccctacacacctcaggctaagcctcctgatttgtatgataccaacacgtccctcagt
atgtctcgagatgcatctgtgtttcaagatgagagcaatatgtctgttctggatattccc
actgctactccggaaaagcaggtaacacagatgcgccagggccgaggtaggctgggcgag
gaagactctgatgtagatattgaagggtatgatgatgaggaggaggatgggaaacctaag
actccagccccagaaggtgaagatggagatggtgatcttgcagatgaagaggaaggaact
gtgcaacagcctcaagccagtgtcctgtatgaggatttgcttatgtctgaaggagaagat
gatgaagaagatgctgggagtgatgaagaaggagataatcctttctctgctattcagttg
agtgaaagtggaagtgactctgatgtggcatctggtggtataagacccaaacagccccgc
ctgcttcaggagaacacaaggatgggcatggaaaatgaagaaagcatgatgtcctatgag
ggagacggtggggaggcttcccatggtttggaggatagcaacatcagttatgggagctat
gaggagcctgatcccaagtcgaacacccaagacacaagcttcagcagcatcggtgggtat
gaggtatcagaggaggaagaagatgaggaggaagagcagcgctctgggccgagtgtacta
agccaggtccacctgtcagaggacgaggaggacagtgaggatttccactccattgctggg
gacagtgacttggactctgatgaatga
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integrated database retrieval system
