Sciurus carolinensis (gray squirrel): 124971719
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Entry
124971719 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: cullin-4B-like
KO
K10609
cullin 4
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03420
Nucleotide excision repair
ncar04120
Ubiquitin mediated proteolysis
ncar05170
Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124971719
09124 Replication and repair
03420 Nucleotide excision repair
124971719
09160 Human Diseases
09172 Infectious disease: viral
05170 Human immunodeficiency virus 1 infection
124971719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124971719
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124971719
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ncar04147
]
124971719
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
124971719
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
124971719
TCR (transcription coupled repair) factors
Cul4-CSA complex
124971719
Exosome [BR:
ncar04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124971719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
SecA_SW
Motif
Other DBs
NCBI-GeneID:
124971719
NCBI-ProteinID:
XP_047391332
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All DBs
Position
X:complement(100455783..100503132)
Genome browser
AA seq
912 aa
AA seq
DB search
MSHSSESGEKNEDRATSEDNGFSSPNPSAAAAAQEVRSATDGNTSTTPPTSAKKRKLNSS
SSSSSSNSSNEREDFDSTSSSSSTPPLQPRDSASPSTSSFCLGVSVAASSHVPIQKKLRF
EDTLEFVGFDAKMAEESSSSSSSSSPTAATSQQQQLKNKSILISSVASVHHANGLAKSST
TVSSFANSKPGSAKKLVIKNFKDKPKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELY
QAVENLCSYKISANLYKQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMI
MIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGE
AIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRL
EEEADRLITYLDQTTQKSLIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFS
RVRGGVQVLLQQWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDHIIDICFLKNEKFI
NAMKEAFETFINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKD
VFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQ
FKQYMQNQNVPGNIELTVNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKL
QWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRT
LQSLACGKARVLAKXPKGKDIEDGDKFICNDDFXHKLFRIKINQIQMKETVEEQASTTER
VFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYMER
DKENPNQYNYIA
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgtcacactcatctgaatcaggagaaaagaatgaggaccgggcaacctcagaagacaat
ggtttttcttcccccaatccctcagctgctgctgctgctcaggaggtcagatctgccact
gatggtaataccagcaccactccgcccacctctgccaagaagagaaagttaaacagcagc
agcagcagtagcagcagtaacagtagtaacgagagagaagactttgattccacgtcttcc
tcctcttccactcctcctttacaacccagggattcggcatccccttcaacctcgtctttc
tgcttgggggtttcagtggctgcttccagccacgtaccgatacagaagaagctgcgtttt
gaagacaccctggagtttgtagggtttgatgcgaagatggctgaggaatcctcctcctcc
tcctcctcatcttcaccaactgctgcaacatctcagcagcagcaacttaaaaataagagt
atattaatctcttctgtggcttcggtgcatcatgcaaacggcctagccaaatcttctacc
accgtctctagctttgctaacagcaagcctggctctgctaagaagttagtgatcaagaac
tttaaagataaacctaaattaccagaaaactacacagatgaaacatggcagaaactgaaa
gaagcagtggaagctattcagaatagtacttcaattaagtacaatttagaagaactctac
caggctgtagaaaatctctgttcttacaagatttctgcaaacttgtacaaacagctgaga
cagatttgtgaagatcatatcaaagcacagattcatcaattcagagaggattctttggat
agtgttctttttctaaagaagattgaccgatgctggcaaaatcattgtagacaaatgatc
atgatcaggagcatttttttgtttctggatagaacttatgttcttcagaattcaatgcta
ccctccatttgggacatgggactggagttatttagggctcatattataagtgatcagaaa
gtccaaaataaaacaattgatggcattcttctcttgatcgagagagaaagaaatggtgaa
gcaattgatagaagtttactccgaagccttttaagtatgctttctgatttgcaaatttat
caagattcttttgaacaacgatttttggaagaaactaatcggctctatgcagctgaaggc
caaaagttgatgcaagaaagagaggttcctgaatatcttcatcatgttaacaaacgtcta
gaagaagaagcagacagacttattacttacttagatcagactacccagaagtcattaatt
gctactgtagaaaaacagcttctaggtgaacacttaacagcaattcttcaaaaaggttta
aataatcttcttgatgaaaaccgaattcaagatttatctctcctgtatcaactcttcagc
agagttcgaggtggagttcaggtgctcttgcaacagtggattgaatatatcaaggcattt
gggagcactattgttattaatcctgaaaaagataaaaccatggttcaagaattgctagat
tttaaagataaggttgaccatataattgatatctgctttctgaagaatgaaaaatttatc
aatgccatgaaagaagcttttgaaacattcattaacaaaagaccaaataaacctgctgaa
cttatagctaagtatgtagattcaaagcttcgtgcaggcaacaaagaagctacagatgaa
gaacttgagaaaatgttggataaaattatgatcatatttagattcatctatggcaaggat
gttttcgaggccttctataagaaagatttagccaagcgcctgttagttgggaagagtgca
tctgtagatgctgaaaaatcaatgctgtccaaacttaaacatgaatgcggagctgctttc
accagcaaacttgaaggaatgtttaaagatatggaactttctaaagacatcatgattcag
ttcaaacagtatatgcagaatcagaatgtacctgggaatattgaattaactgtgaatatc
ctgacaatgggttattggccaacttacgtgcctatggaagtccatttgccaccagagatg
gtaaaacttcaggaaattttcaagacattttacctaggcaaacatagtggcaggaaactt
cagtggcagtcaaccctaggacactgtgtgctaaaagcagaatttaaagagggtaaaaaa
gaactccaggtctctctttttcaaacactggtgctgctaatgtttaatgagggagaggag
ttcagcttagaagagatcaaacaggctactggaatagaggatggagagttaaggagaaca
ctgcagtcattagcctgcggaaaagctagagttctggccaaanacccaaagggcaaagat
atcgaagatggtgacaagttcatttgtaatgatgatttcnaacacaaacttttcaggata
aagatcaatcaaatccagatgaaagaaacggtcgaggagcaagcaagcactacagaaaga
gtatttcaagatagacagtatcaaattgatgctgcaattgttcgaattatgaagatgaga
aagacacttagtcacaatctccttgtttcagaagtgtacaaccagttaaaatttccagta
aagcctgctgatcttaagaagagaatagaatccttaattgaccgggactacatggaaaga
gataaagaaaacccaaaccagtacaactatattgcatag
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