Sciurus carolinensis (gray squirrel): 124971783
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Entry
124971783 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03013
Nucleocytoplasmic transport
ncar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124971783
09122 Translation
03013 Nucleocytoplasmic transport
124971783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124971783
03041 Spliceosome [BR:
ncar03041
]
124971783
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124971783
Spliceosome [BR:
ncar03041
]
Complex C
Other components
EJC/TREX
124971783
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124971783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
124971783
NCBI-ProteinID:
XP_047391495
LinkDB
All DBs
Position
X:complement(103381790..103491861)
Genome browser
AA seq
1594 aa
AA seq
DB search
MAAATVVVPAEWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGN
LKHEQASNVLNDVSEFREDMPSILADVFCILDIETNCLEEKSKRDYFTQLVLACLYLVSD
TVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELG
QDLSGNITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCE
PQTLCHILGFKFKFYQEPNGETPSSLYRVAAVLLQFNLIDLDDLYVHLLPADNCIMDEHK
REIVEAKQIVRKLTMVVLSSEKMDEREKEKEKEEEKVEKPPDNQKLGLLEALLKIGDWQH
AQNIMDQMPPYYAASHKLIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNKRAPKQ
AETFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKEFQSDGSKQEDKEKTEVIL
SCLLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQHRYHLYGQWKNETYNSHPLLVK
VKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDS
LKYLTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIDLAGL
LQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIR
NTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQF
GGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGS
KQQHKVHKYITSCEMVMAPVHEAVVSLHVSKVWDDISPQFYATFWSLTMYDLAVPHTSYE
REVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQMEHVQRVLQRLKLEK
DNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCARFVELVHQQKTPNFSTLLCYDRV
FSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRATYEKECGNYPGFLTILRATGFD
GGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNL
GQALERRVHKICQEEKEKRPDLYALAMGYSGQLKSKKSYMIPENEFHHKDPPPRNAVASV
QNGPGGGPSSSSIGSASKSDESSTEETDKSRERSQCGVKAVNKASSTTPKGNSSNGNSGS
NSSKAVKENDKEKGKEKEKEKKEKTPATTPEARVLGKDGKEKPKEERPNXDEKARETKER
TPKSDKEKEKFKKEEKTKDEKFKTTVPIVESKSTQEREREKEPSRERDIAKEMKSKENVK
GGEKTPVSGSLKSPVPRSDIAEPEREQKRRKIDTHPSPSHSSTVKDSLIELKESSAKLYI
NHTPPPLSKSKEREMDKKDLDKSRERSREREKKDEKDRKERKRDHSNNDREVPPDLTKRR
KEENGTMGVSKHKSESPCESPYPNEKDKEKNKSKSSGKEKGSGDSFKSEKMDKISSGGKK
ESRHDKEKIEKKEKRDSSGGKEEKKHHKSSDKHR
NT seq
4785 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcaactgtggtggttcccgcagagtggataaagaactgggagaaatcagga
agaggcgaatttttacatttatgccggattctcagtgaaaataaaagccatgatagttcg
acttatagagatttccagcaagctctctatgagttgtcgtaccatgtcattaaaggaaat
ctaaagcatgaacaggcgtctaatgttcttaatgacgttagtgaatttcgtgaggatatg
ccctccattcttgctgatgtattctgcatattagatattgagacaaattgtttagaagaa
aaaagcaagagagactattttacacagttggtattagcatgtttgtatttagtttcagac
acagttctaaaggaacgtctggatccagaaacattggaatcattagggcttatcaaacaa
tcacagcagttcaatcaaaagtccgttaaaatcaagacaaaacttttttataagcagcaa
aaattcaatttgttaagagaagaaaatgaaggttatgccaagctgattgctgaattgggg
caagatttatctggaaatattactagtgatttaatcttagaaaatatcaaatctttaata
ggatgctttaatctggatcccaatagagttttggatgtcattttagaagtgtttgaatgc
aggccagaacacgatgacttctttatatctttattagaatcttacatgagtatgtgtgaa
ccgcaaacactgtgtcatattcttgggttcaaattcaagttttaccaggaaccaaatggg
gagactccatcatctttatacagagttgcagcagtacttctgcaatttaatcttattgat
ttagatgatctttatgtacatcttcttccagctgataattgcatcatggatgaacacaaa
cgagaaattgtggaagctaagcaaatcgttagaaaacttacgatggtagtgttgtcttct
gaaaaaatggatgaacgagagaaagaaaaggaaaaagaagaggagaaagtagagaagcca
cctgacaaccaaaaacttggtttgttagaagccttgttaaagattggtgattggcagcat
gcacagaacattatggatcagatgcctccatactatgcagcctcacataaactaatagcc
cttgctatttgcaagctaattcacatcactattgagcctctctaccgaagagttggtgtt
cctaaaggtgctaaaggctcacctgttaatgctttgcaaaacaagagagcaccaaagcag
gcagaaacctttgaagatttgaggagagatgtattcaatatgttctgttaccttggtcct
cacctttctcacgatcccattttgtttgcaaaagtggtgcgcataggcaagtcgtttatg
aaggagtttcagtctgatggaagcaaacaagaagataaagagaaaacggaagttatcctt
agctgtttgcttagcattactgaccaggtactacttccatctctttctttgatggactgc
aatgcttgtatgtctgaggaactatgggggatgtttaaaacatttccctatcagcataga
taccatctgtatggccagtggaagaatgaaacttataacagtcacccacttttagtaaaa
gttaaagctcaaacaatagacagagccaaatatatcatgaagcgtttaaccaaggaaaat
gtgaagccttcaggaagacaaattggaaagttgagccacagcaatccaaccattttgttt
gattatatcttgtcacaaatacagaaatatgataatttaataacacctgtagttgattca
ttgaaatacctcacgtcattgaattatgatgtcttggcctattgtatcattgaagctttg
gctaatccagaaaaggagagaatgaaacatgatgacacaaccatctcaagctggcttcag
agtctggctagtttctgtggtgcagtttttcgtaaatatccaattgatcttgctggtctc
cttcagtatgtggccaatcaactcaaggcaggcaaaagttttgacctgcttatattaaaa
gaagtggtacaaaaaatggcaggaatagaaattacagaggaaatgacaatggaacaacta
gaggccatgactggtggggagcagctaaaagccgagggtggttattttggccagatcagg
aacactaaaaaatcctctcagagattaaaggatgcattattggaccatgatcttgctctt
cctctatgtttgcttatggctcagcagaggaatggggtaatctttcaagaaggtggagag
aaacatttgaaacttgtgggaaagctctatgaccagtgtcatgataccctggtacaattt
ggtgggtttttagcatcaaatctaagcacagaagattatataaagcgagtgccttcaatt
gatgtgctctgtaatgaattccatacaccccatgatgcagcattttttctgtctaggcct
atgtatgcacaccatatatcgtcaaagtatgatgaacttaaaaaatcagaaaagggaagt
aaacagcagcataaagttcataagtacattacgtcatgtgagatggtgatggctcctgtc
catgaagcagtggtctccttacatgtttccaaagtctgggatgacatcagccctcaattc
tatgccacattctggtcattgacaatgtatgaccttgctgttccacataccagctatgaa
cgagaagtcaataaacttaaagtccagatgaaagcaattgatgacaatcaggaaatgcct
ccaaataaaaagaaaaaagagaaggagcgttgtactgctcttcaggataaacttcttgaa
gaagaaaagaaacagatggaacatgtacaaagagttctacagagattgaaattggaaaag
gacaactggcttttagcaaaatctaccaaaaatgagaccatcacaaaatttctacagctg
tgtatatttcctcgatgtattttttcagcaattgatgctgtttactgtgctcgttttgtt
gaattggtacatcaacagaaaactccaaatttttccacacttctttgctatgatcgagtt
ttctctgacatcatttacacagttgcaagctgtactgaaaatgaagctagtcgatatggg
agatttctttgctgcatgttagagactgtgaccagatggcatagtgatagagccacatat
gaaaaggaatgtggaaactatccaggattccttaccatattacgggcaactggatttgat
ggtggaaataaagctgatcaattagattatgaaaattttcggcatgttgtgcataaatgg
cattacaaactaaccaaggcatcagtacattgccttgaaactggcgaatatactcacatc
aggaatatcttgattgtgctaacaaaaatacttccttggtatccaaaagttttgaatctg
ggtcaggctttggaaagaagagtgcataaaatctgccaagaagaaaaagagaagaggcca
gatctatatgcattggctatgggctactctgggcagttgaaaagtaaaaagtcatacatg
atacctgaaaatgagtttcatcacaaagacccccctccgaggaatgctgtggccagtgta
caaaatgggcctggtggtgggccttcttcatcatcgataggaagtgcatctaaatcggat
gaaagcagtactgaggagactgataaatcaagggagagatctcagtgtggtgtgaaagct
gttaataaagcttctagtaccacaccaaaagggaattcaagcaatggaaatagcggctca
aacagcagcaaagctgttaaagaaaatgacaaagaaaaagggaaagagaaagaaaaagag
aaaaaagaaaagactccagctactactccagaggccagggtacttggtaaagatggtaaa
gaaaaaccaaaggaagagcggccaaatnaagatgaaaaagcaagagagaccaaggaaaga
acgcctaagtctgacaaagaaaaagaaaaattcaagaaggaagaaaaaactaaagatgag
aaattcaaaaccactgttcccatcgtagaatcaaaatcgactcaagaaagggaaagagag
aaggagccatccagagaaagagatatagcaaaggaaatgaagtcaaaggaaaatgttaaa
ggaggagaaaaaacaccagtttctgggtccttgaagtcacctgttccccgatcagatatt
gcagagcctgaaagggaacaaaaacgccgcaaaattgatacccacccttctccgtcacat
tcctccacagtaaaggacagtctcatcgaactcaaggagtcttctgcaaagctctacatt
aatcatactcctccaccactgtccaagagtaaggagagagaaatggacaagaaagatttg
gacaagtcaagggaaagatccagagaaagagagaaaaaagatgaaaaggacaggaaagag
cggaaaagggatcactcaaacaatgaccgtgaagtgccaccagacttaaccaagaggcgg
aaagaggaaaatggaacaatgggggtttcaaaacacaaaagtgaaagcccatgtgagtct
ccttatccaaatgagaaagacaaggaaaaaaataagtcaaaatcttcaggcaaagaaaaa
ggcagtggtgattcatttaaatctgagaagatggataaaatctcctctggtggcaagaag
gagtccagacatgacaaagaaaagatagaaaagaaagagaaacgggacagttcaggagga
aaggaagagaaaaaacatcataagtcctcggacaagcacagataa
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