Sciurus carolinensis (gray squirrel): 124971896
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Entry
124971896 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: host cell factor 1-like
KO
K14966
host cell factor 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03083
Polycomb repressive complex
ncar04980
Cobalamin transport and metabolism
ncar05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
124971896
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
124971896
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124971896
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ncar01009
]
124971896
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncar03036
]
124971896
03029 Mitochondrial biogenesis [BR:
ncar03029
]
124971896
Protein phosphatases and associated proteins [BR:
ncar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124971896
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
124971896
HMT complexes
COMPASS/SET1 complex
124971896
MLL-HCF complex
124971896
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
124971896
Mitochondrial biogenesis [BR:
ncar03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
124971896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_5
Kelch_3
Kelch_4
Kelch_1
Kelch_6
Kelch_2
fn3
Motif
Other DBs
NCBI-GeneID:
124971896
NCBI-ProteinID:
XP_047391838
EnsemblRapid:
ENSSCRG00010022862
LinkDB
All DBs
Position
X:complement(130110295..130136142)
Genome browser
AA seq
2046 aa
AA seq
DB search
MASAVSPANSPAVLLQPRWKRVVGWSGPVPRPRHGHRAVAIKELIVVFGGGNEGIVDELH
VYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEW
KRLKAKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRP
GSGVVAWDIPITYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLGDLWTLDIETL
TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLN
LDTMAWETILMDTLEDNIPRARAGHCAVAINTRLYIWSGRDGYRKAWNNQVCCKDLWYLE
TEKPPPPARVQLVRANTNSLEVSWGAVATADSYLLQLQKYDIPATAATATSPTPNPVPSV
PANPPKSPXPAAAAPAVQPLTQVGITLLPQAAAAPPTTTTIQVLPTVPGSSISVPAAART
QGVPAVLKVTGPQATTGTPLVTMRPASQAGKAPVTVTSLPAGVRMVVPTQSAQGTVIGSS
PQMSGMAALAAAAAATQKIPPSSAPTVLSVPAGTTIVKTVAVTPGTTTLPATVKVASSPV
MVSNPATRMLKTAAAQVGTSVSSAANTSTRPIITVHKSGTVTVAQQAQVVTTVVGGVTKT
ITLVKSPISVPGGSALISNLGKVMSVVQTKPVQTSAVTGQASTGPVTQIIQTKGPLPAGT
ILKLVTSADGKPTTIITTTQASGAGTKPTILGISSVSPSTTKPGTTTIIKTIPMSAIITQ
AGATGVTSSPGIKSPITIITTKVMTSGTGAPAKIITAVPKIATGHGQQGVTQVVLKGAPG
QPGTILRTVPMGGVRLVTPVTVSAVKPAVTTLVVKGTTGVTTLGTVTGTVSTSLAGAGGH
STSASLATPITTLGTIATLSSQVINPTAITVSAAQTTLTAAGGLTTPTITMQPVSQPTQV
TLITAPSGVEAQPVHDLPVSILASPTTEQPTATVTIADSGQGDVQPGTVTLVCSNPPCET
HETGTTNTATTTVVANLGGHPQPTQVQFVCDRQEAAASLVTSTVGQQNGSVVRVCSNPPC
ETHETGTTNTATTATSNMAGQHGCSNPPCETHETGTTSTATTAMSNIGAGQQRDTRRASS
TPTVVRISVVPGALEGAQGSVKPQCQTRQTSATSTTMTVMATGAPCSTGPLLRPSMALEA
GVHSPAFVQLAPLSGKVGPGGPSNKDMLLGRQLETHHTHTTNTPTTARSIMGTGEPSAAR
VVSMPAYESLQTSSPSTTVTVTALEALLCPSATVTQVCSNPPCETHETGTTNTATTSNAG
SAQRACSNPPCETHETGTTHTATTATSSGGAGQPEGGQQPPAGRPCETHQTTSTGTTMSV
SVGALLPDAAPSHRTLESSLEAAAVPTITSQAGAALLAPFPTQRVCSNPPCETHETGTTH
TATTVTSNMSSNQDPPPAASDQGEVESTQGDNVNIASSSAITTTVSSTLPRAVTTVTQST
PVPGPSVPPPEELQVSPGPRQQLPPRQLLQSSSTPLMGESAEVLSTSQTPELQTAVDLSS
TGDPSSGQEPASSAVVATVVVQPPQPTQSEVDQLTLPQELMAEAQAGTTTLMVTGLTPEE
LAVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAVMGTGEPMDTSEAAAAVTQAELGHLS
AEGQEGQATTIPIVLTQQELAALVQQQQQLQEAQAQAQQQHHLPTEALAPADSLNDPTIE
SNCLNELSGAVPSTVALLPSTATESLAPSNTFVAPQPVVVASPAKLQAAATLTEVANGIE
SLGVKPDLPPPPSKAPVKKENQWFDVGVIKGTNVMVTHYFLPPDDAVPSDDDSGTVPDYN
QLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLT
WEPPSVTSGKIIEYSVYLAIQSSQAGGEPKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNA
HIDYTTKPAIIFRIAARNEKGYGPATQVRWLQETSKDSSGTKPASKRPMSSPEMKSAPKK
SKADGQ
NT seq
6141 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggccgtgtcgcccgccaactcgccagcggtgctcctgcagccccgctggaag
cgagtagtgggctggtcgggtccggtgccccgaccccgccacggccaccgtgccgtggcc
atcaaggagctcatcgtggtgtttggtggcggcaatgaaggaatagtggacgaactgcac
gtgtacaacacggcaaccaaccagtggttcatcccagctgtgagaggggacatccctcca
gggtgtgcggcctatggcttcgtctgtgatggtactcgcctgctggtgtttggtgggatg
gtggagtacgggaaatacagcaacgatctctatgagctccaggcaagccggtgggagtgg
aagagactcaaagcaaaaacgcccaaaaatggcccccctccatgtcctcgacttgggcac
agcttctcccttgtgggcaacaaatgctacctgttcgggggtctggccaatgatagtgag
gaccctaagaacaacattccaaggtacctgaatgacttatatatcctggaattacggcca
ggctctggagtggtagcctgggatatccccatcacttacggagtcctgcccccacctcga
gagtcacatactgctgtggtctacactgaaaaagacaataagaagtccaagctggtgatc
tatggagggatgagtggctgcagactgggggatctctggaccctggatattgagacgttg
acgtggaataagcccagtctcagtggggtggcaccccttcctcgcagtcttcactctgca
accaccataggaaacaaaatgtatgtgtttggtggctgggtgcctctcgtcatggatgat
gtcaaagtggccacacacgagaaggagtggaagtgtaccaacacgctggcttgtctcaac
ctggataccatggcctgggagaccatcctgatggacacactggaggacaacattccccgc
gctcgagctggccactgtgcagttgccatcaacacccgcctgtatatttggagtgggcgc
gatggctaccggaaggcctggaacaaccaggtctgctgcaaggacctctggtacttggag
acagaaaagccaccacccccggcccgggtacaactggtacgagccaacaccaactccctg
gaggtgagctggggggcagtggcaacagccgacagttatcttctgcagctccagaaatat
gacattcctgccacggctgctactgccacctcccccacacccaatccagtcccatctgtg
cctgccaaccctcccaagagccctngcccagcagcagccgcacctgctgtgcagccgctg
acccaagtaggcatcacgctcctgccccaggctgctgccgcgcccccgaccaccaccacc
atccaggtcttgccgacggtgccaggcagctccatttctgtgcccgctgcagccaggact
caaggtgtccctgctgttctcaaagtgactggtcctcaggctacaacaggaaccccattg
gtcaccatgcgacctgccagccaggctgggaaggcccctgtcactgtgacctccctgcct
gctggtgtgcgaatggttgttcccacgcagagtgcccaggggacggtgattggtagcagc
ccacagatgagtgggatggccgcgttggcagctgctgctgctgccacccagaaaatccct
ccttcttcagcgcctacggtgctgagtgtcccagcgggcactactatcgtcaagactgtg
gctgtgacacctggcacgaccaccctcccagccactgtgaaggtggcctcctctcccgtc
atggtgagcaatcctgccactcgtatgctgaagactgcagctgcccaagtcgggacatct
gtctcctctgccgctaacacatctacccgccctatcatcacggtgcacaagtcagggact
gtgaccgtggcccagcaagcccaggtggtgaccacagttgtaggtggggtcaccaagacc
atcaccctcgtgaagagccccatctcagttccaggaggcagtgctttgatttccaatctg
ggcaaagtgatgtcagtggtccagaccaaaccagttcagacttcagcagtcaccggccag
gcatctacgggtcctgtaactcagatcatccagaccaaaggacccctgccagcggggaca
attctgaagctggtgacctcagcagacggaaaacctaccaccatcatcaccaccacacag
gccagtggggcagggaccaagcccaccatcctgggcatcagcagcgtctctcccagcacc
accaaacctggcacgaccaccatcatcaagaccatccccatgtccgccatcatcacccag
gcaggcgccacaggtgtgactagcagtcctggcatcaagtcccctatcaccattatcacc
accaaggttatgacttcaggaactggagcacccgctaaaatcatcactgctgtccccaag
attgccactggccatgggcagcaaggagtgacacaggtggtgctaaagggggcccctgga
cagccaggcaccatcctccgcaccgtgcccatggggggcgttcgcctggtcacccctgtc
accgtctctgccgtcaagccagccgtcaccacattggttgtgaagggcaccacaggtgtt
acaaccttaggcacggtgacaggcactgtttccaccagccttgctggagctgggggccat
agcaccagcgcctccctggccacgcccatcaccacactgggtaccattgccaccctctca
agccaggtgattaaccccaccgccattactgtgtcagctgcgcagaccacactgacggcc
gctggcgggctcaccacacccactatcacaatgcagcctgtctcccagcctacccaggtg
actctgattacagcacccagcggggttgaggcccagcctgtgcacgacctccctgtgtcc
attctggcctcacctactacagagcagcccacggccacagtcaccatcgccgactctggt
cagggtgatgtgcagcctggcactgtgacactggtgtgctccaatccaccctgtgagacc
cacgagacaggcactaccaacacggccaccaccactgttgtggccaaccttgggggacac
ccccagcccacccaagtgcagtttgtctgtgataggcaggaggcagctgcttctcttgtg
acctcaactgtggggcagcagaatggtagtgtggtccgcgtctgctcgaacccaccctgt
gaaacccatgagacaggaaccaccaacactgccaccacagccacctccaacatggctggg
cagcatggctgctcaaacccaccctgtgagacccatgagacgggcaccaccagcaccgcc
acgacggccatgtccaacattggcgctggccagcaacgagatacccgtcgtgcctctagc
acccccactgtggtccggatcagtgtggttcctggggcattggagggagcccagggttct
gtcaagccccagtgccaaacccgccagaccagcgcaaccagcaccaccatgactgtgatg
gccaccggggccccatgctcaactggtcctctgctgaggccaagcatggccctggaggct
ggggtccatagccctgcttttgtgcagttggcccctctgagtggtaaagttgggccaggt
ggccccagcaacaaggacatgctcctggggcgccagctggagacgcatcacacacacaca
accaataccccgaccacggcacgctccatcatgggtactggggagcccagtgcagctcgc
gtggtctccatgcctgcatatgagagcctccaaaccagttcacccagcaccactgtaact
gtgacggccctggaggctctgctgtgcccctcggccacagtgacccaagtctgctccaac
ccgccatgcgagacccacgagacgggcaccaccaacaccgccactacctccaacgcaggc
agcgcccagcgggcgtgctccaacccaccttgtgagacccatgagacgggtaccacacac
acggccaccaccgccacctccagtgggggggcaggtcagcctgagggtgggcagcagccc
cctgctggccgaccctgtgagacgcaccagaccacttccacaggcaccactatgtcagtc
agcgtgggtgccctgctccctgatgctgccccatcccacaggaccctggagtccagcttg
gaggcagcggcagtgcccaccatcacttcccaggctggtgctgcattgctggctcctttc
ccaacacagagggtgtgctccaaccccccctgtgagacccacgagacgggcaccacacac
acagccaccaccgtcacctccaacatgagctcaaatcaagaccccccaccagctgccagc
gatcagggagaggtggagagcacccagggtgataatgtgaacatcgccagctccagtgcc
atcacaacaaccgtgtcctccacactgccacgggcagtgactaccgtgacacagtccaca
cctgttccaggcccctccgtgccgcccccagaggaactccaggtctcaccaggacctcgc
cagcagctgccaccacggcaactcctgcagtcttcctccacacctctgatgggggagtcc
gccgaggtcctgtcaacctcccagacccctgagctccagaccgccgtggatctgagcagc
acaggggacccatcttcaggccaggagcctgccagctcagcggtagtggctactgtggtg
gtccagccacctcagcccacacagtctgaagtagaccagttaacacttccccaagagctg
atggctgaggcccaggcgggcaccaccaccctcatggtaacagggctcacccctgaggaa
cttgcagtgactgctgctgcagaagcagctgcccaggctgcagccaccgaggaggcccag
gccctggccatccaggcagtgctccaggccgcacagcaggctgtcatgggcaccggggaa
cccatggacacatctgaggcggcagcagctgtgacacaggcagagctgggtcacctttca
gctgagggccaggagggccaggccaccaccatccctattgtgctgacacagcaggaattg
gctgccttggtgcagcagcagcaacagctacaggaggcccaggcccaggcccagcagcag
caccacctccccaccgaggccctggccccagccgacagcctcaatgacccgaccatcgag
agcaactgcctcaatgagctgtctggtgctgtccccagtactgtggccctgttaccctcg
acggccactgagagcctggctccgtccaacacctttgtggccccccagccagttgtggta
gccagcccagcgaagctacaggctgcagctaccctaactgaagtggccaatggcatagag
tccctgggtgtgaagccagacctgccacccccgcccagcaaagcccccgtgaagaaggag
aaccagtggtttgatgtgggggtcattaagggcactaatgtgatggtgacacactatttc
ctgccgccagatgatgctgtcccatcagatgatgactcgggcactgtccctgactataac
cagctaaagaagcaggagctacagccaggcacagcctataagtttcgtgttgctggtatc
aacgcctgtggccgggggcccttcagcgagatctcagcctttaagacgtgtctgcctggt
ttcccaggggccccttgtgccattaaaatcagcaaaagtccagacggtgctcacctcacc
tgggagccgccctctgtgacctccggcaagatcatcgagtactctgtgtacctggccatc
cagagctcacaggctggtggggagcccaagagctccacccctgcccagctggccttcatg
cgagtgtactgcgggcccagcccctcttgccttgtgcagtcctccagcctctccaatgcc
cacattgactacaccaccaagcccgccatcatcttccgcatcgctgcccgcaacgagaag
ggctatggcccagccacacaagtgaggtggttacaagaaaccagtaaagacagctcaggc
accaagccagccagcaagcggcctatgtcctctccggaaatgaaatctgctccaaagaaa
tctaaggcagatggtcagtga
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