Sciurus carolinensis (gray squirrel): 124972099
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Entry
124972099 CDS
T08117
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
124972099
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ncar01009
]
124972099
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ncar04515
]
124972099
Protein phosphatases and associated proteins [BR:
ncar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124972099
Cell adhesion molecules [BR:
ncar04515
]
Cadherins
Protocadherins
124972099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
DUF6377
Drf_FH1
Motif
Other DBs
NCBI-GeneID:
124972099
NCBI-ProteinID:
XP_047392231
LinkDB
All DBs
Position
X:74291289..74976628
Genome browser
AA seq
1350 aa
AA seq
DB search
MDLLSGTYIFAVLLACVVFQSGAQEKNYTVREEMPENVLIGDLLKDLNLSLIPDKSLTSP
MQFKLVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGVMMDARCFYEVEVAVLPDEIF
RLVKIRFLIEDINDNAPLFPATVINISIPENSAINSRYALPAAIDPDIGINGVQNYQLIK
GQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVA
DTNDNRPVFKEKEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFYFSNLVSNIAKRLF
HLNTTTGLITVKEPLDREESASHKLLVLASDGGSMPARAMVLVNVTDINDNVPSIDIRYI
INPTNGTVVLSENAPLNTKVALITVMDKDADHNGRVTCFTDHEVPFRLRPVFSNQFLLET
AAYLDYESTREYAIKLLAADAGKPPLNQSSMLLVKVKDENDNAPVFTQPFISLSVPENNS
PGTQLTKISATDADSGRNAEISYLLGTDAPSEFNLDHRTGILTAVKKLDREKQEKYYFTV
LAKDNGMPPLMTNATVLVTVLDQNDNSPIFTHNEYNFYVPENLPRHGTVGLITVTDPDYG
ENSAVTLSILDVNDDFTIDPQTGVIRPNISFDREKQESYTFYVKAEDGGRISRSSTAKVT
INVVDVNDNKPVFVVPPSNYSYELVLPSTNPGTVVFKVVAIDNDTGMNAELRYSIVGGNT
KGLFVIDQTTGNITLKEKCVVADLGLHRLVVKAKDLGQPDSLFNVVIVNLFVNESVTNAT
LIHELVRKSIEAPATQNIETADASSPTSDYVKIMVAIVAGTITVILVIFITAVVRCRQSP
HLKAAQKNKQNSEWVTPNPENRQMIMMKKKKKKKKKHAPKNLLLNFVTIEETKADDADND
RNSVTLDLPIELEEQTMGKYNWGTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSK
HHIIQELPLDNTFVACDSISKCSSSSSDPYSVSECSYPVTTFKTPVSVHTRPPMKEVVRS
RTPRKESATVEIWTHPQPQRKSEGKKAGKSQRRVTFHLPEGSQESSSDGGLGDHDAGSLP
STSHALPLGYPQEEYFDHAAPNNRTEGDGNSDPESTFIPGLKKAAEITVQPTVEEASDNC
TQECLILGHSDACWMPASLTHSSPSQAQASTLCHRSPLTQASTRRRSPPVTQTIALCHSP
PVTQAIALCHSPPPVQASALHHSPPLAQATALHHSPPLAQASALRYSPPLAQAAAIHRSP
PLPQAASLHRSQVQPPMGLQQGWVQGAGADGLHSLDQGVQGSARAQFYTMSERLHPNDDS
IKVIPLTTFTPGQQARPSGGDSPIMEEHPL
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atggacttgttgtccgggacgtatatatttgcggtcctgttagcatgcgtcgtgtttcag
tctggcgcccaggagaaaaactacaccgtccgagaagaaatgccagaaaacgtcctgata
ggcgacttgttgaaagacctcaatttgtcgctcattcccgacaagtccttaacatctcct
atgcagttcaagctagtgtacaagacaggggatgtgccactgattcggattgaagagggt
actggtgagatcttcactactggtgctcgcattgatcgtgagaaattatgtgctggtgtc
atgatggatgcccgttgcttttacgaagtggaggttgctgttttgccggatgaaatattt
agactggttaagatacgttttctgatagaagacataaatgataatgcaccgttattccca
gcaacagttatcaacatctcgattccagagaattcggctataaactctcgatatgctctc
ccagcggctattgatcctgacataggaataaatggagttcaaaactaccaactaattaag
ggtcagaatatttttgggcttgatgtcatagaaacaccagaaggagacaagatgccacaa
ctgattgttcaaaaggagttagatagggaagagaaggatacctatgtaatgaaagtaaaa
gtcgaagatggcggctttcctcaaagatccagtactgctattttgcaagtaagtgttgct
gatacaaatgacaaccgcccagtattcaaggagaaggaaattgaggtcagtataccagaa
aatgctcctgtaggtacttcagtgacacagctccatgccacagatgctgacataggtgaa
aatgccaagattcacttctatttcagcaatctagtctccaacattgccaagagattattt
caccttaacaccaccactggactcatcacagtcaaagaaccactagatagggaagaatca
gcaagtcataagttactggttttagcaagtgatggtggatcaatgccagcaagagcgatg
gtgctggtaaatgttacagatatcaatgataatgtcccatcaattgacataagatacatt
atcaatccaaccaatggcactgtggttctttcagaaaatgctcctctcaacaccaaagtc
gctctcattactgtgatggataaggatgccgaccataatggtagagtaacatgcttcaca
gatcatgaagttcctttcagattaaggccagtatttagtaatcagttcctcctggaaact
gctgcataccttgactatgagtccacaagagaatatgccattaaactactggccgcagat
gctggcaaacctcctttgaatcagtcatccatgcttctcgtcaaagttaaagatgaaaat
gacaatgctccagttttcacccagcctttcataagtctttctgttcctgagaataactcc
cctggcacacagttgacaaaaataagtgcaacggatgcagacagtggacgtaatgctgaa
atcagttacctgctgggtactgatgctccatctgaattcaacctggatcatcgtacaggc
attctcactgcagtgaagaaattagatagagaaaaacaggaaaaatattatttcactgtt
cttgcaaaagataatgggatgccacccttaatgaccaatgccacagtcttagtaaccgtc
cttgatcagaatgataacagcccaattttcactcacaatgagtacaacttctatgtccca
gaaaaccttccaagacatggcacagtaggattaatcactgtaactgatcctgattatggg
gagaattctgcagtcactctctccattttagatgtgaatgatgatttcactattgatcca
cagactggtgtcattaggcctaatatttcatttgatcgagaaaaacaagaatcttacact
ttctatgtaaaggctgaagatggcggtaggatatcacgctcttcaactgcaaaagtaacc
ataaatgtagttgatgtcaatgacaacaaaccagtttttgttgtccctccttccaactac
tcttatgaactggttctcccatccactaatccaggcacagtggtctttaaggtagttgcc
attgacaatgacactggcatgaatgcagagcttcgctacagcattgtaggaggaaacaca
aagggactgtttgtaattgaccaaacaactggcaacatcacactaaaggagaaatgtgtg
gttgcagaccttggtttacacagattggtagtcaaagctaaggatttaggacaacctgat
tctctcttcaatgttgtaattgtcaatctgtttgtgaatgagtcagtgaccaatgctaca
ctcattcatgaattggtgcgcaaaagcattgaagcgccagcaacccaaaatattgagaca
gctgatgcatcttcaccaaccagtgactatgtcaagatcatggttgccattgttgctggc
actataactgttatactagtgatttttatcactgctgtagtaagatgtcgccaatcacca
caccttaaggccgctcagaaaaacaagcagaattctgaatgggttactccaaacccagaa
aacaggcagatgataatgatgaagaaaaagaagaagaagaagaagaagcatgcccctaag
aacttgctgcttaactttgtcactattgaagaaacaaaggcagatgatgctgacaatgat
agaaacagtgtcacactagaccttcccattgaactggaagagcaaaccatgggcaagtac
aactggggcactacgcctactaccttcaagcctgacagccctgatttggcccgacactac
aaatctgcctctccacagccagctttccagattcagcctgaaacacccctgaattcaaag
caccacatcatccaggaactgcctcttgataacacctttgtggcctgtgattccatctcc
aagtgttcctctagcagttctgatccctacagtgtttctgagtgcagctatccagtgaca
accttcaagacccctgtgtctgtacacaccagaccgccaatgaaggaggttgtaagatct
cgcacccccaggaaagagtcagcaactgtggaaatctggactcatcctcaaccacagcgg
aaatctgaggggaaaaaggcaggaaagtcccagcgacgtgtcacatttcacctaccagaa
ggctctcaggaaagcagcagtgatggtggactgggagaccatgatgcaggcagccttccc
agcacatcccatgctctgccccttggctatcctcaggaagagtactttgatcatgccgca
cccaacaaccgtactgaaggggatggcaactctgatcctgaatctactttcattcctgga
ttaaagaaagctgcagaaataactgtgcaaccaactgtggaagaggcctctgacaactgt
actcaagaatgtctcatcttgggccattctgacgcctgctggatgccagcttctctgacc
cattccagtccttcacaggcacaggcctctactctatgccaccggtcgcccctgacacaa
gcatctacacgccgacgcagtcctccagtgacacagaccattgctctctgccacagtcct
ccagtgacccaggctattgcactgtgccatagtcctccaccagtacaggcctctgctctc
caccacagtcctcctctagcacaggctactgcacttcaccacagcccaccactagcacag
gcctcagccctccgctatagccctcccttggcacaagctgctgcaatccaccgcagtcca
cctctgccacaggctgcctcccttcaccgcagccaagtccagccaccgatgggtttgcag
caaggttgggtgcaaggtgctggagctgatggactacattctcttgatcagggagtgcaa
ggtagtgctagagctcagttttacaccatgtctgaaagacttcatcccaatgatgattca
attaaagtcattcctttgacaaccttcacaccaggccaacaggccagaccctccggaggt
gattcccccattatggaagaacatcctttgtaa
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