Sciurus carolinensis (gray squirrel): 124972289
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Entry
124972289 CDS
T08117
Name
(RefSeq) RNA-binding motif protein, X chromosome isoform X1
KO
K12885
heterogeneous nuclear ribonucleoprotein G
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124972289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncar03041
]
124972289
Spliceosome [BR:
ncar03041
]
Common components
Common spliceosomal components
hnRNP proteins
124972289
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM1CTR
RRM_7
RRM_5
RRM_occluded
PHM7_cyt
RBD_DEAH11
Motif
Other DBs
NCBI-GeneID:
124972289
NCBI-ProteinID:
XP_047392515
LinkDB
All DBs
Position
X:complement(115214475..115223749)
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AA seq
391 aa
AA seq
DB search
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR
GPPSRGGHMDDGGYSMHFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGR
APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD
YTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGP
PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPP
RDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atggttgaagcagatcgcccaggaaagctcttcattggtgggcttaacacggaaacgaat
gagaaagcccttgaagcagtatttggcaaatatggacgaatagtggaagtgctcttgatg
aaagatcgtgaaaccaacaaatcaagaggatttgcttttgtcacctttgaaagtccagca
gatgctaaggatgcagccagagacatgaatggaaagtccttagatggaaaagccatcaag
gtggaacaagccaccaaaccatcatttgaaagtggtagacgtggcccacctccacctcca
agaagcagaggccctcccagaggtcttagaggaggaagaggaggaagcggaggaactagg
ggacctccctcacgtggagggcatatggatgatggtggctattccatgcattttaacatg
agttcttccaggggacctcttccagtaaaaagaggaccaccaccaagaagtgggggtcct
cctcctaaaaggtcagccccttcaggaccagttcgcagcagcagcggaatgggaggaaga
gctcctgtatcacgtggaagagatagttatggaggcccacctagaagggaacccctgccc
tctcgtagagatgtttatttatccccaagagatgatggatattctactaaagacagctat
tcaagcagagattacccaagttctcgtgacacaagagattatgcaccacctccgagagat
tatacttaccgtgattatggtcattccagttcacgtgatgactatccatcaagaggctat
agtgatagagatggatatggtcgggatcgtgattattcagatcatccaagtggaggttcc
tacagagattcatatgagagttatggtaactcacgtagtgctccacctacacgagggccc
ccgccatcttatggtggaagcagtcgctatgatgattacagcagctcacgtgacggatat
ggtggaagtcgagacagttactcaagcagccgaagtgatctctactcaagtggtcgtgat
cgggttggcagacaagaacgagggcttcccccttctatggaaagggggtaccctcctcca
cgtgattcctacagcagttcaagccgcggagcaccaagaggtggtggccgtggaggaagc
cgatctgatagagggggaggcagaagcagatactag
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