Sciurus carolinensis (gray squirrel): 124972325
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Entry
124972325 CDS
T08117
Name
(RefSeq) endoribonuclease Dicer isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
124972325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncar03036
]
124972325
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
124972325
microRNA pathway
RISC loading complex
124972325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
DEAD
ResIII
Cas3-like_C_2
DSRM_2
Motif
Other DBs
NCBI-GeneID:
124972325
NCBI-ProteinID:
XP_047392574
LinkDB
All DBs
Position
2:complement(190969839..191036554)
Genome browser
AA seq
1914 aa
AA seq
DB search
MAGLQLVTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGK
TFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVN
ASWTKERWNQEFTKHQVLIMTCYVALNVLKNGFLSLSDINLLVFDECHLAILDHPYREIM
KLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYTSQP
CEIVVDCGPFIDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVL
VVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCEEHFSPASLDL
RFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDDYVSWSDSEDEDEDEEIGEKEKP
ETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPR
NKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPISNYIMLADTDKRKSFEEDLKTYKAIEKILRNKCSKSVDAGEADVDPVVDDDDV
FPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLP
INSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHD
EEETSVPGRPGSTKRRQCYPKAIPECLRDSYPKPEQPCYLYVIGMVLTTPLPDELNFRRR
KLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLH
QYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIP
STKYSKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFR
YPNLDFGWKKSIDSKSFISISNSPSAENDNYCKHSTIVVPENAAHQGANRTSLENHDQMS
VNCRTLLSESPSKLQTEVSTDLTAVNGLSYNKTLANGSYDLANRDFCQGNQLNYYKQEIP
VQPTTSYPIQSLYHYENQPKPSNECTLLSNKYLDGNANKSTSDGNPVMAAMPGTTDTVRA
LVDRRDAEQSPSAGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTY
LFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQD
KSNADKWEKDEMTKDCMLANGKLDDDSEEEEEEEEEEEEEDLMWRAPKEEAEYEDDFLEY
DQEHIKFIDNMLMGSGAFVKKISLSPFSTTDSAYEWKMPKKSSLGSMPFSSDFEDFDYSS
WDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIADCVEA
LLGCYLTSCGERAAQLFLCSLGLKVLPAIKRTGREKSLCPARENSSSQQKSLSGSCAAAS
PRASAWRDLEYGCLQIPPRCMFDHPDADRTLTHLISGFENFEKKINYRFKNKAYLLQAFT
HASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASL
AVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAM
GDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFS
PAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS
NT seq
5745 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctgcagctcgtgacccctgcttcctcaccaatgggtccattctttggactg
ccatggcaacaagaagcgattcatgataacatttatacgccaagaaaataccaggttgaa
ctgcttgaagcagctctggatcataataccatcgtctgtttgaacactggctcagggaag
acatttattgcagtactactcactaaagagttgtcctatcagatcaggggagacttcaac
agaaatggaaaaaggaccgtgttcttggtcaactctgcaaaccaggttgctcagcaagtg
tcagctgtcagaactcattcagatctcaaggttggggagtactcaaacctagaagtaaat
gcatcttggacaaaagagagatggaaccaggaatttactaagcaccaggttctcattatg
acttgctatgtcgccttgaatgtcttgaaaaatggtttcttatcactgtcagacattaac
ttgttggtgtttgatgagtgtcatcttgccattctagaccacccctatcgagaaattatg
aagctctgtgaaaattgtccatcatgtcctcgaattttgggactaactgcttcaatttta
aatggaaaatgtgatccagaggaattagaagaaaagattcagaaactggagaaaatcctt
aagagtaatgctgaaactgcaactgacctggtggtcttagacagatatacttctcagccg
tgtgagattgtggtagattgcggaccatttattgacagaagtgggctttatgaaagactg
ctgatggaattagaggaagcacttaattttatcaatgactgtaatatatctgtacattca
aaagaaagagattctactttaatttctaaacagattctgtcagactgtcgtgcagtgttg
gtggttctgggaccctggtgtgcagataaagtagctggcatgatggtgagggaacttcag
aagtacatcaaacatgagcaagaggagctgcacaggaagttcctcctgttcacagacact
ttcctgaggaaaatccacgccctgtgtgaagagcacttctcgcccgcctcgcttgacctg
aggttcgtgactcctaaagtcataaagctgctcgaaatcctgcgcaagtataagccctac
gagcggcagcagtttgaaagtgtcgagtggtacaacaacaggaaccaggacgattatgtg
tcttggagtgactccgaggatgaggatgaggatgaggaaatcggagaaaaagagaagcca
gagacgaattttccttctccctttaccaacattttatgcggaattattttcgtggaaaga
aggtacacagcagtcgtcctcaacagattgataaaggaagctggcaaacaagacccagag
ctggcttatatcagcagcaactttataactggacatggcatcggaaagaatcagcctcgt
aacaaacagatggaagcagagttcagaaagcaggaagaggtacttagaaaatttcgggca
catgagacaaacctgcttattgcaacgagtattgtagaagagggtgttgatattccaaaa
tgcaacttggtggttcgttttgatttgcccacagagtatcgatcctatgttcaatctaaa
ggaagagcaagggcaccgatctctaattacattatgttagcagatacagacaaaagaaaa
agttttgaagaagacctgaaaacctacaaagctattgaaaagattttgagaaataaatgt
tccaagtctgtcgatgctggtgaggctgacgttgatcctgttgtggatgacgatgatgtt
ttcccaccatatgtgttgaggcctgatgatgggggcccccgcgtaacaatcaacacagcc
attggacacatcaatagatactgtgctagattaccaagtgatccttttactcatctagct
cccaaatgtcgaactcgagagttgcctgatggtacattttattcaactctttacctgcca
atcaactcacctcttcgagcctccattgttggcccaccaatgagctgtgtacgattggct
gaaagagttgtagctctcatttgctgtgaaaaactgcacaaaattggtgaactggatgaa
catttgatgccagttggaaaagaaactgttaaatatgaagaagagcttgatttacatgat
gaagaagagaccagtgttccaggaagaccaggttccacaaaacgaaggcagtgctaccca
aaagcaattccagagtgtttgagggatagttaccccaaacccgagcagccctgttacctg
tatgtgataggaatggtcttaactactcctttacctgatgaacttaacttcagaaggcgg
aagctctatccccccgaagataccacacgatgctttgggatactgacagccaaacccata
cctcagattccacactttcctgtgtacacacgctctggagaggttaccatatccattgag
ttgaagaagtctggattcacgttgtctctacagatgcttgaattgattacaagacttcac
cagtatatattctcacatattcttcggcttgaaaaacctgcactagaatttaaacctaca
gacgctgattcagcatactgtgttctacctcttaacgttgttaatgactccagcactttg
gacattgattttaaattcatggaagatattgagaaatctgaagctcgcataggcattccc
agcacaaaatattcaaaagaaactccctttgtctttaaattagaagattaccaagatgca
gtcatcattccaagataccgcaattttgatcaacctcatcgattttatgtagctgatgtg
tacactgatcttaccccactcagtaaatttccttctcctgagtatgaaacttttgcagaa
tattataaaacaaagtataaccttgacctgaccaatctcaaccagccactgctggatgtg
gaccacacatcttccagacttaatcttctgacacctcgacatttgaatcagaaggggaaa
gctcttcctctcagcagtgctgagaagaggaaagccaagtgggagagcctgcagaataaa
cagatactggttccagaactctgtgctatacatccaattccagcatctctgtggagaaaa
gcagtttgtctccccagtatactttaccgccttcactgccttttgactgcagaggagcta
agagcccagacagccagtgatgctggcgtgggagtcagatcgcttcctgcggattttaga
taccctaacttagacttcgggtggaaaaaatctattgacagcaaatctttcatctcaatt
tctaattccccttcggctgaaaatgataattactgtaagcacagcacaattgtagtccct
gaaaatgctgcacatcaaggtgctaatagaacctccttagaaaaccatgaccagatgtct
gtgaactgcagaacgttactcagcgagtcgccgagtaagctccaaactgaggtttcaaca
gatcttacagcagttaatggtctttcttacaataaaacccttgccaatggcagttacgat
ttagctaacagagacttttgccaaggaaatcagctgaattactacaagcaggaaatacct
gtacaaccaactacctcatatcccattcagagtttataccattatgagaaccagcccaag
cccagcaatgaatgtactctactgagtaataaataccttgatggaaatgctaacaaatct
acctcagatggaaatcccgtgatggccgccatgcccggtacgacagacaccgttagagcg
ctcgtggaccggagggacgctgagcagagcccttctgctgggtactcctcgaggactctg
ggccccaatcctggactgattcttcaggctctgactttgtcaaatgccagtgatgggttt
aacctggagcggctcgaaatgcttggtgattcctttctaaagcacgccatcaccacgtac
ctgttttgcacttaccccgacgctcacgagggccgcctgtcatacatgagaagcaagaag
gtcagcaactgtaacctatatcgtcttggcaaaaagaagggactgcccagccgcatggtg
gtgtcgatatttgatccccctgtgaattggcttcctcctggttatgtagtaaatcaagac
aaaagtaacgcagataaatgggaaaaggatgaaatgacaaaagactgcatgttggctaat
ggcaaactggacgacgactcggaggaggaggaggaggaagaggaggaggaggaggaggag
gacctgatgtggagggccccgaaggaggaagccgaatatgaggacgatttcctggagtac
gatcaggagcatatcaagtttatagacaacatgttaatgggctcaggcgcttttgtgaag
aagatttctctttctcctttttcaaccaccgattctgcatatgagtggaaaatgcccaag
aagtcctccctaggtagtatgccgttttcatcggactttgaggactttgactatagctcc
tgggatgccatgtgctatctggatccgagcaaggcagtggaggaggacgactttgtggtg
gggttctggaatccgtcagaagaaaactgtggcgtcgacacgggaaagcagtccatttct
tacgacctgcacaccgagcagtgcatcgccgacaagagcatagccgactgcgtggaggcc
ctgctgggctgctacctgaccagctgcggcgagcgggctgcccagctcttcctctgctcg
ctcgggctgaaggtgctcccggcgattaagaggactggccgggaaaagagcctgtgccct
gcccgggagaattccagcagccaacaaaagagcctttcagggagctgcgctgcggccagc
cctcgcgcctcggcctggagggacctggagtacggctgtctgcagatccctccgcgctgc
atgtttgaccatccagatgcggacagaaccctgactcacctgatatcagggtttgagaat
tttgagaagaaaatcaactacagattcaagaataaagcttaccttctgcaggccttcacg
cacgcctcctaccactacaacactatcactgattgttaccagcgcttagaattcctggga
gatgcaattttggactacctcataaccaagcacctttatgaagacccacggcagcactcc
ccaggggtcctgactgacctgcgctctgctctggtcaacaacaccatctttgcgtcactg
gctgtgaagtatgactaccacaagtactttaaagctgtttctcccgagctcttccatgtc
atcgacgactttgtgcagtttcagcttgagaagaacgagatgcaagggatggactctgag
cttaggagatcggaagaggatgaagagaaagaagaggatattgaagttccaaaggccatg
ggggatatttttgagtcacttgctggtgccatttatatggatagtgggatgtcactggag
atggtgtggcaggtgtactatcctatgatgcggccactaatagaaaagttttctgcaaat
gtgccccgttcccctgtgcgagaactgcttgaaatggaaccagaaactgccaaatttagc
ccagctgagagaacgtacgatgggaaggtcagagtcactgtggaagtagtcggcaagggg
aaattcaaaggcgtcggccggagttacaggatcgccaaatccgcagcagcaagaagagcc
ctccgaagcctcaaagcaaaccaacctcaggttcccaacagctga
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integrated database retrieval system
