Sciurus carolinensis (gray squirrel): 124972345
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Entry
124972345 CDS
T08117
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36 isoform X1
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03440
Homologous recombination
ncar04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124972345
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
124972345
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ncar01002
]
124972345
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124972345
03036 Chromosome and associated proteins [BR:
ncar03036
]
124972345
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124972345
Peptidases and inhibitors [BR:
ncar01002
]
Metallo peptidases
Family M67
124972345
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
124972345
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
124972345
BRISC complex
124972345
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
124972345
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
124972345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
Motif
Other DBs
NCBI-GeneID:
124972345
NCBI-ProteinID:
XP_047392627
LinkDB
All DBs
Position
X:131084868..131122992
Genome browser
AA seq
316 aa
AA seq
DB search
MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR
TVAEKVDTVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW
YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK
SSESPHGSQDFWSSSQHISIEGQKEEERYERIEIPIHIVPHVTIGKVCLESAVELPKILC
QEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQE
LQQEKEELMQELYSLE
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaggtggtacaggcggtgcaggcggttcatctcgagtctgacgctttccta
gtttgtctcaaccacgctttgagcacagaaaaggaggaggtgatggggctgtgcataggg
gagttgaatgatgacacaaggagtgactccaaatttgcatatactggaactgaaatgcgc
acagttgctgaaaaggtggacactgtcagaattgttcacattcattctgtcatcatcttg
cgacgttctgataagaggaaggaccgcgtagaaatttctccagagcagctgtcagcagcc
tcaacagaggcggagaggttggctgaattaacaggtcgccccatgagagttgtgggttgg
tatcattcccatcctcatataactgtttggccttcacatgttgatgttcgcacacaagcc
atgtaccagatgatggatcaaggttttgtaggacttattttttcctgtttcatagaggat
aaaaacacaaagactggtcgggtactctacacttgcttccaatccatacaggcccaaaag
agctcagagtcccctcatggttcacaagacttctggagctccagccagcacatctccatt
gagggccagaaggaagaggaaaggtatgagagaattgaaattccaatccatattgtacct
catgtcaccattgggaaagtatgccttgaatcagcagtggagctgcccaagatcctatgc
caggaggagcaggatgcgtataggaggattcacagccttacacatctggactcagtaacc
aagatccataatggttcagtgtttaccaagaatctgtgcagtcagatgtcagcagtcagc
gggcctctcctacagtggttggaggacagattggagcaaaaccaacagcatttgcaggag
ttacaacaagaaaaagaagaacttatgcaagaactttattccctagaataa
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