Sciurus carolinensis (gray squirrel): 124972374
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Entry
124972374 CDS
T08117
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124972374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124972374
Enzymes [BR:
ncar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124972374
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124972374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
PRY
zf-C3HC4_4
zf-C3HC4
Ig_DSCAM-DSCAML_C
zf-C3HC4_3
Pur_ac_phosph_N
zf-RING_2
zf-RING_5
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
124972374
NCBI-ProteinID:
XP_047392687
LinkDB
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Position
X:complement(6789529..7147694)
Genome browser
AA seq
667 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCATNESVESISAFQCPTCR
HVITLSQRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAFDASTMSSAEKVLCQ
FCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHED
EKVNMYCVTDDQLICALCKLVGRHRDHQVAALSERYDKLKQNLESNLTNLIKRNTELETL
LAKLIQTCQHVEVNASRQEAKLTEECDLLIEIIQQRRQIIGTKIKEGKVMRLRKLAQQIA
NCKQCIERSASLISQAEHSLKENDHARFLQTAKNITERVSMATASSQVLIPEINLNDTFD
TFALDFSREKKLLECLDYLTAPNPPTIREELCTASYDTITVHWTSDDEFSVVSYELQYTI
FTGQANVVSLCNSADSWMIVPNIKQNHYTVHGLQSGTKYIFMVKAINQAGSRSSEPGKLK
TNSQPFKLDPKSAHRKLKVSHDNLTVERDESSSKKSHTPERFTSQGSYGVAGNVFIDSGR
HYWEVVISGSTWYAIGLAYKSAPKHEWIGKNSASWALCRCNNNWVVRHNSKEIPIEPAPH
LRRVGILLDYDNGSIAFYDALNSIHLYTFDVAFAQPVCPTFTVWNKCLTIITGLPIPDHL
DCTEQLP
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggaaacactggagtcggaactgacctgccctatttgtctggagctctttgaggaccct
ctcctgctgccctgcgcacacagcctctgcttcaactgtgcccaccgcatcttggtgtca
cactgtgccaccaacgagtctgtggagtccatcagcgcattccagtgccccacctgccgg
catgtcatcacgctcagccagcgaggtctagacgggctcaagcgcaacgtcaccctgcag
aacatcatcgacaggttccagaaagcatcagtgagcgggcccaattcccccagtgagacc
cgccgggagcgggcctttgacgccagcaccatgtcttctgccgagaaggtcctctgccag
ttctgtgaccaggatcctgcccaggacgctgtgaagacctgtgtcacttgtgaagtgtcc
tactgtgatgagtgcctgaaagccactcacccgaacaagaagccctttacaggccatcgt
ctgattgagccaatcccggactcgcacatccgggggctgatgtgcctggagcacgaggat
gagaaggtgaatatgtactgtgtgaccgatgaccagttaatctgtgccttgtgtaaactg
gttgggcggcaccgcgatcatcaggtggcagctttgagtgagcgctatgacaaattgaag
caaaacttagagagtaacctcaccaaccttattaagaggaacacagaactggagaccctt
ttggctaagctcatccaaacctgtcaacatgttgaagtcaatgcatctcgtcaggaagcc
aaattgacagaggagtgtgatcttctcattgagatcattcagcaaagaagacaaattatt
ggaaccaagatcaaagaagggaaggtgatgaggcttcgcaaactagctcagcagattgca
aactgcaaacagtgcattgagcggtcggcatctctcatctcccaagcagaacattctctg
aaggagaatgatcatgcccgttttctacagactgctaagaatatcactgagagagtctcc
atggcaactgcatcctctcaggtcctaattcctgaaatcaacctcaatgacacatttgac
acctttgccttagatttttcccgagagaagaaattgctggagtgtctggattaccttaca
gctcccaaccctcccacaatcagagaagagctctgcacagcttcatatgacacaatcact
gtccactggacctctgatgatgaattcagcgtggtctcctacgagcttcagtacaccata
ttcactgggcaagccaatgtcgttagtctgtgtaattctgccgatagctggatgatcgtg
cccaacatcaagcagaatcactacacagtgcatggtctgcaaagcggcaccaagtacatc
ttcatggtcaaggccatcaaccaggcaggcagccgcagcagtgagcctggaaagttaaag
acaaacagtcaaccatttaaactggatcccaaatctgctcatcgaaaactgaaggtgtcc
catgataacttgacagtagaacgtgatgagtcatcatccaaaaagagtcatacacctgaa
cgcttcaccagccaagggagctatggagtggctggaaatgtgtttattgatagtggccgg
cattactgggaagtggtcataagtggaagcacatggtatgccattggccttgcttacaaa
tcagccccaaagcacgaatggattgggaagaactctgcttcctgggccctctgccgctgc
aacaataactgggtggtgagacacaatagcaaggagatccccatcgagccagccccccac
ctgcggcgtgtcggcatcctgctggactatgataatggttccatcgctttttatgatgct
ttgaactccatccacctctacacctttgatgtggcatttgcacagcctgtgtgccccacc
ttcaccgtgtggaacaagtgtttgacgattataactggtcttcccatcccagaccatttg
gactgtacagagcagctgccatga
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