Sciurus carolinensis (gray squirrel): 124972407
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Entry
124972407 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6-like
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04613
Neutrophil extracellular trap formation
ncar05014
Amyotrophic lateral sclerosis
ncar05034
Alcoholism
ncar05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
124972407
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
124972407
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
124972407
09165 Substance dependence
05034 Alcoholism
124972407
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ncar01009
]
124972407
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124972407
04131 Membrane trafficking [BR:
ncar04131
]
124972407
03036 Chromosome and associated proteins [BR:
ncar03036
]
124972407
Enzymes [BR:
ncar01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
124972407
Protein phosphatases and associated proteins [BR:
ncar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124972407
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
124972407
Membrane trafficking [BR:
ncar04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124972407
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
124972407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
124972407
NCBI-ProteinID:
XP_047392759
LinkDB
All DBs
Position
X:40275895..40294890
Genome browser
AA seq
1160 aa
AA seq
DB search
MTSTGQDSTITRQRRSRHNPQSPLQDSSVISKRSVKKGAVPRSSPNLAEVKKKGKMKKLS
QATEEDLIVGLQGLDLNPESKAQIGTGLVFDEQLNDFHCLWDDSFPEGPERLHAIKEQLI
QEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNS
YTCACLASGSVLRLVDAVLGAEIRNGMAVIRPPGHHAQHSLMDGYCMFNHVAVAARYAQK
KHHIQRVLIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQG
QGYTINVPWNQVGMRDADYIAAFLHILLPVAFEFQPQLVLVAAGFDALQGDPKGEMAATP
AGFAQLTHLLMGLAGGKLILSLEVATNLRSLAEGVSASLHTLLGDPCPXLESPGAPCPSA
QTSLSCTLEALEPFWEVLVRSAETVEEENMEEENMEENEEEGPWEPVLPILTWPVLQDRT
GLVYDQRMMTHCNLWDNHHPETPQRILRIMCHLEELGLAGRCLVLPVRPATKTELLTCHS
SEYVERLRATEKMKTRDLHREGANFDSIYICPSTFFCAQLATGAVCCLVEAVLSGEVLNG
IAVVRPPGHHAEQDAACGFCFFNSVAVAARHAQAISRRALRILIVDWDIHHGNGTQHIFE
DDPSVLYVSLHRYDHGTFFPMGNEGASSQIGRAAGAGFTVNVAWNGPRMGDADYLAAWHR
LVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLLMGLANGRIILILEGG
YNLTSISESMAACTHSLLGDPTPLLTLSRPPQSAALASISETIQVHQKYWRSLRVMKVEE
KEGSYKSKSITKKMPQPANSGSAKGMTAPEGKVLEESKRKATAALSVEESTSSQTKSETA
KVALTQDQSSDTVIGGATTDQATSEETVGAATKDWATSKAAVGKDTLDQTTAKEAKGGSX
ANPKSSSLVCRNKTPSGSPVQVAIAKLPSNQLMGNLKTLELGPEAQKTPEAQTAEEVSLL
GEAAGGHDVDNSKLTQGSEDLTDMDQAIYYAVTPLSWCPHLVAVCPTPVAGLNINQPCEN
CGTLEENWVCLSCYQVYCSRFVNAHMVQHHEASGHPLVLSYTDLSAWCYPCQAYVHHQAR
LDVKNIIHHIRFGENMPHPQ
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgacctccactgggcaggattccaccataaccaggcagagaaggagcaggcataaccca
cagtcgccccttcaggactccagcgtcatctcgaagcggagtgttaagaagggtgctgta
cctcgctcaagcccaaatctagcggaggtaaagaagaaaggcaaaatgaagaagctgagc
caagcaaccgaagaagacctaattgtggggcttcaaggactggatctgaaccctgagtcc
aaggcacagattggcaccggcttggtgtttgatgagcagctcaatgatttccactgcctc
tgggatgacagtttcccagaaggccctgagcggctacatgccattaaggagcagctgatc
caggagggcctcctggatcgctgtgtgtcctttcaggcccggttcgcagaaaaggaagag
ctgatgttggttcacagcctagaatacattgatctgatggagacgacccagtacatgaat
gagggagaactccgtgtactagcagatacctatgactcagtttatctgcatccgaattca
tacacctgtgcctgcctagcctcaggctctgtcctcaggctggtggatgcggtcctgggg
gctgagattcggaatggcatggctgttatcaggcctcctggacaccatgcccagcacagt
cttatggatggatattgcatgttcaaccatgtggctgtggctgcccgctatgctcaaaag
aagcaccacattcagagggtccttatcgtggattgggatgtacaccatggtcaaggaaca
cagttcaccttcgaccaggaccccagtgtcctctacttctccatccatcgctatgagcag
ggtcggttctggccccaccttaaggcctctaactggtccaccacaggttttggtcaaggc
caaggatacaccatcaatgtaccttggaaccaggtggggatgcgggatgctgactacatt
gctgctttcctacacattctgctgccagttgcctttgagttccagcctcagctggtcctg
gtggcagctggatttgatgccctccaaggggaccccaagggtgagatggccgctactcca
gcagggtttgctcagttaacccacctactcatgggtctggccggaggcaagctgatcctg
tctctggaggtggctacaaacctccgctccctggctgagggagttagtgcatcgctccac
acccttctgggagacccatgcccantgctggaatctcctggtgccccctgcccaagtgcc
cagacttcactctcctgtactctggaagcccttgagcccttctgggaggtccttgtgaga
tcagctgagaccgtggaggaggagaacatggaagaggaaaatatggaggagaatgaagag
gagggaccctgggagcctgtgctgcctattctgacatggccagtgctacaggatcgcacc
ggattggtctatgaccaaagaatgatgactcactgtaacctatgggacaaccatcaccct
gagacaccccagcgcatcttgaggattatgtgccacctagaggaactgggccttgcggga
cgctgcctcgttctgccagtgcgtcctgccaccaaaactgagctgcttacctgccacagt
tctgagtacgtggaacgtctccgggccacggagaagatgaaaacccgggaccttcaccgt
gagggtgccaactttgactccatctacatctgccccagcacctttttctgcgcacagctt
gccacgggtgctgtctgttgcctggtggaggctgtgctctcgggagaggttttgaatggc
attgctgtggtacgacccccaggacaccatgctgagcaggacgccgcctgtggtttctgc
tttttcaattctgtggcagtggctgctcgtcacgcccaggccatcagtagacgtgccctg
cggattcttattgtggactgggacatccatcatggtaatgggactcagcacatatttgag
gatgatcccagtgtactatacgtgtccctgcaccgctatgaccacggcaccttcttcccc
atggggaatgaaggcgccagcagccagataggccgggctgcaggcgcgggcttcactgtc
aatgtggcctggaatgggccccgcatgggtgacgctgactacctggctgcctggcatcgt
ctggtgcttcccattgcctatgagtttaacccagaactggtgctggtctcagctggcttt
gatgctgcacgaggggacccactggggggctgccaggtgtcacctgagggttatgcccac
ctcacccacctactgatgggccttgctaacggccgtattatccttatcctggagggtggc
tacaacctgacatccatctcagagtctatggctgcttgtacccactctctccttggtgat
cccactccccttctgaccctgtcgcggcctccacagtcagcagccctggcctccatctct
gaaaccatccaagtccatcagaaatattggcgcagtttgcgggtcatgaaggtagaagaa
aaggagggatcctacaagtctaagtctattaccaagaagatgccccaaccagccaattct
ggatctgctaagggaatgacagcccccgaagggaaagttctagaagaaagcaagaggaag
gctaccgcagcattgtctgtggaagagtccacttcaagccagactaaatcagagacagct
aaggtggctctcactcaggaccagtcctcagacacagtcattgggggagccacaacagac
caggccacctcagaagagactgtgggggctgccacaaaggactgggccacctcaaaggca
gctgtggggaaagacacgctggaccagaccactgctaaagaggccaagggaggaagctaa
gccaatccaaaatcttctagcctcgtgtgcagaaacaagaccccatcaggctcacctgtg
caggtagccatagcaaagctgccctcaaaccagctaatggggaatctcaaaaccttggaa
ctaggccctgaagctcagaaaactccagaagctcagactgcagaagaggtgagcctacta
ggagaggcggctggaggtcatgatgtggataactcaaagctgacacagggatctgaggat
cttactgatatggaccaggccatatattatgctgtgacaccactgtcctggtgtccccat
ttggtggcagtatgccccactcctgtagcaggcctgaatataaaccagccttgtgagaac
tgtggaacactcgaggagaactgggtgtgtctgtcttgctatcaggtctactgcagccgc
tttgtcaacgctcatatggtccaacaccatgaagcctctggacacccactggtcctcagc
tacactgacctgtctgcctggtgttacccctgtcaggcctatgtccaccaccaggctcgt
ctagatgtgaagaacatcatccatcatataaggtttggggagaacatgccccacccacaa
taa
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