Sciurus carolinensis (gray squirrel): 124972585
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Entry
124972585 CDS
T08117
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03013
Nucleocytoplasmic transport
ncar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124972585
03015 mRNA surveillance pathway
124972585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124972585
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124972585
mRNA cycle factors
P-body specific factors
124972585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
124972585
NCBI-ProteinID:
XP_047393029
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All DBs
Position
X:complement(99869127..99885726)
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AA seq
483 aa
AA seq
DB search
MKEEKEQRPKEKRVTLLTPPGATASSGAVSLEGAKGDDKQDRNREKKEALSKVVIRRLPP
TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDILLFRDRFDGYVFL
DNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYATDNEKMTSTPET
LLEEIEAKNRELIAKKTTPLLSFLKNKQRMREEKREERRRREIERKRQREEERRKWKEEE
KRKRKDIEKLKKIDRIPERDKLKDEPKIKVHRFLLQAVNQKNLLKKPEKGDEKELDKREK
AKKLDKENLNDERPSGQSCILPKRSEGEFKDEKPKRPEDESCRDYRERERDYERDQERIF
RERERLKRQEEERRRQKERYEKEKAFKRKEEEIKKEKEALRDKGKKNESTESIGSSEKSE
KKEEVVKRDRIRNKDRPAMQLYQPGARSRNRLCPPDDTTKSADSTTQRKEESGISHRKEG
GEE
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagagaaggagcaaaggcctaaggagaagcgagtaaccctgttaacgcccccg
ggggccacagccagcagcggtgcggtttcgttggaaggagccaaaggggacgataagcaa
gatcgcaacagggagaagaaagaagccctaagcaaggtggtaattcgaagattacctccc
actttgaccaaggaacaacttcaggaacatcttcaacctatgcctgagcatgattatttt
gagtttttttctaatgacactagtttgtatcctcatatgtatgccagagcatacatcaac
tttaaaaaccaagaggacattcttttgttcagggatcgctttgatggttatgtattcctt
gacaataaaggtcaggaatatcctgctatagtagaatttgcaccttttcaaaaagctgca
aaaaagaagactaagaaaagagataccaaagttgggactattgatgatgatccagaatat
agaaaatttttggaaagttatgccacagataatgagaaaatgacatctactccagagaca
ctgctagaagaaatagaagccaaaaacagagaattaatagctaaaaagacaaccccactt
ttgagcttcctgaagaacaagcagagaatgagagaagaaaagagggaagaaagaaggcgg
cgagaaatagaaagaaaaagacaaagagaagaagagagaaggaagtggaaagaggaggaa
aaaagaaaaaggaaggatatagaaaagctaaagaagatagatagaattccagaaagggac
aaattaaaggacgaaccaaagattaaggtacacaggtttctgttacaagctgtgaatcag
aaaaatctgctcaagaaaccagaaaaaggagatgaaaaagagttggacaaaagagaaaaa
gccaagaaactggacaaagagaatctgaatgatgaaagacccagtgggcaaagttgtatc
ctgcccaagcgttctgagggtgaatttaaagatgaaaagccaaagagacctgaagatgag
agctgcagagactatagggagcgggaacgggattatgaacgagatcaggagcgcatattc
cgtgagagagagagactgaagcggcaagaagaagagcgccgaaggcagaaagagcgctat
gagaaggagaaggcttttaaaagaaaagaagaagaaattaaaaaagagaaagaagcactt
cgtgataaaggaaagaagaatgaaagtacagaatcaataggcagctcagaaaaatctgaa
aagaaagaggaagtggttaagagagaccgcataagaaacaaggatcgtccagcaatgcaa
ctctaccagccaggagcccgaagccgaaatcgactttgtccccctgatgacaccaccaag
tctgcagattcaacaacacaaagaaaggaggaaagtggtattagccatagaaaagaagga
ggagaggagtga
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