KEGG   Sciurus carolinensis (gray squirrel): 124973562
Entry
124973562         CDS       T08117                                 
Name
(RefSeq) lysine-specific demethylase 5D isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
ncar  Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ncar01009]
    124973562
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ncar03036]
    124973562
Enzymes [BR:ncar01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     124973562
Protein phosphatases and associated proteins [BR:ncar01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     124973562
Chromosome and associated proteins [BR:ncar03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    124973562
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID zf-C5HC2 JmjN PHD PHD_4 FYVE_2
Other DBs
NCBI-GeneID: 124973562
NCBI-ProteinID: XP_047393391
LinkDB
Position
Y
AA seq 1510 aa
MEPMSDDFRPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEV
DNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLSKIVM
EEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIIYPYEMFQSGANLVCNTCPF
DSEEKDKEYKPHSIPLRQSVQPSKFSSYSRRAKRLQPEPEPTEEDIEKNPELKKLQIYGA
GPKMMGLGLMAKDKTLRKKDKERITCPPTLTVKEEPSGDGKAMSTLSKEDLSHSLEPCTK
MTMRLRKNHHNTQFIDSYVCRICSRGDEDDKLLLCDGCEDNYHIFCLLPPLPDIPRGVWR
CPKCILAECKRPPEAFGFEQATQEYTLQSFGEMADSFKADYFNMPVHMVPTEVVEKEFWR
LVSSIEEDVTVEYGADIHSREFGSGFPVSNSKRNLSPEEEEYATCGWNLNVMPVLDQSVL
CHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEE
VMKSLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQ
GYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAAFPEKLDLNLAVAVH
KEMFIMVQEERRLRKALLEKGITEAEREAFELLPDDERQCMKCKTTCFLSALACYNCPDG
LVCLSHINDLCKCSSSQQYLRYRYTLDELPTMLHKLKVRAESFDNWANKVRVALEVEDGR
KRSFEELRALESEARERRFPNSELLQQLKNCLTEAEACVSQVLGLVSVQGTRMETPLLTL
PELQILFEQMGSLPCAINQIGDVKDVLEQVEAYQVEAREALTSLPPNLGRLQSLLEKGQK
LGVEVPEAHQLQQQVQQAQWLDEVKQALAPSAQRESLVIMQRLLVMGAKIASSPSVDKAL
AELQELLTIAECWEEKAHFCLEARQKHSPATLEAIIREAENIPVHLPNIQALKEALTKAH
AWAADVNEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELKQLELQVLTAHSWKERASKTFL
KKNSCYTLLEVLCPCADAGSDRIKRSRWLEKELGLYKSDTELLGLSAQDLRDPGSVVIAF
KEGEQKEKEGILELRRINSAKRSPLASSTTVSSATSICVCGQVPARVGALQCDLCQDWFH
GQCVTVPRLLSSLQPSLTSSPLLAWWEWNTKFLCPLCMRSRRPRLETILALLVALQRLPV
RLPEGEALQCLTERAIGWQGRARQALASKDVTALLGQLAELRQQLQTEPRSRKPHTYSSA
PASDPLREDSGNTVPKVKGFLETGESMTRPEKLASGEVSGKSNLELLSSLLPQLTGPVLE
LPEATRIPLEELMMEGDLLEVSLDENHSIWQLLQAGQPPDIERIRTLLELEKPEYQSSRT
RGQALGRRQQRRKQKVDQGRKSEDLIQEEVESKKARSSGEQSFEEETDHENLFLSCPSEH
SPILEGNQNS
NT seq 4533 nt   +upstreamnt  +downstreamnt
atggagccgatgtcggatgacttccgaccgccgcctgagtgcccggtgttcgaacccagc
tgggcagaatttcgagatcctcttggctacatagctaaaatcaggcccatcgcggagaag
tcaggcatttgcaagatacgcccacctgcggactggcaacctccttttgcagtagaagtt
gataactttagatttactcctcgaatccagaggctgaatgaactggaggctcagacaaga
gtgaaactgaactatttggatcaaattgcaaagttctgggaaatccaaggctcttcatta
aagattcccaatgttgagcggaagatcttggacctctacagccttagtaagattgtaatg
gaggagggtggctatgaagccatttgcaaggaccggcggtgggcccgagttgcccagcgt
cttaactacccaccaggaaaaaatattggctctctactacgatctcactatgaacgaatc
atttacccctatgaaatgtttcagtctggagccaaccttgtgtgtaatacatgcccattt
gacagtgaggaaaaagacaaggaatacaaaccccacagcatcccccttcgacagtctgtc
cagccttcaaagttcagcagctatagtcggcgggcaaaaagactacaacctgaaccagag
cccacagaagaggacattgagaaaaatccagagttaaagaagctacaaatatatggggca
ggccctaagatgatgggcttggggctcatggctaaggataaaactctacggaagaaagat
aaagaaaggatcacatgtcctcccactcttacggtgaaagaagaacccagtggggatggg
aaagcgatgtcaacattatctaaagaggacttgagtcatagcctagaaccctgcaccaag
atgactatgcggttgaggaagaatcaccacaatacccagtttattgattcatatgtttgc
cgaatatgctcccggggggatgaagatgataagctgcttctctgtgatggctgtgaagat
aattatcacatcttttgcctattgccaccccttcctgacattcctagaggggtgtggagg
tgcccaaagtgcatcttggcagagtgtaagcggccccctgaagcttttggttttgaacag
gctacccaggagtacactttgcagagttttggtgagatggctgattccttcaaggctgac
tacttcaacatgcctgtgcatatggtgcctacagaggtcgtggagaaggaattctggagg
ttggtaagcagcattgaggaagatgtgacagttgaatatggagcagacattcattccaga
gaatttggtagtggctttcctgtcagcaatagcaagcggaacctatcccctgaggaagag
gagtatgcgacctgtggttggaacctgaatgtgatgcctgtgctcgatcagtctgttctc
tgccacatcaatgcagatatctccggtatgaaagtgccctggctctatgtgggcatggtt
ttttcagcattttgttggcatattgaggatcattggagttactccattaactacctgcac
tggggtgagccaaagacctggtatggagtaccctcactggcagcagagcatttggaggaa
gtgatgaagagtctcacacctgaactgtttgatagccagcctgacctcctacaccaactt
gtcaccctcatgaatcccaacaccctcatgtcacatggtgtgccagttgttcgtacaaat
cagtgtgcaggggagtttgtcatcactttcccccgtgcttaccacagtggctttaaccaa
ggctacaactttgctgaggctgtcaacttttgcactgctgactggctacctgctggacgc
cagtgtattgaacactaccgccggcttcggcgatattgtgtcttctcccatgaagagctt
atctgcaagatggctgccttcccggagaagttggatctaaatctagcagtggctgtgcac
aaggagatgttcattatggtgcaggaggaacggcgtctacgaaaggccttattggagaag
ggcatcacggaggctgaacgagaggcttttgagctgcttccagatgatgagcgtcagtgc
atgaagtgcaagacgacgtgtttcctatcagccctagcatgctacaactgcccagatggc
cttgtctgtctgtcccacatcaatgatctttgcaagtgttcaagtagccaacagtatcta
cgatatcggtacaccttggatgagctgccaaccatgctgcataagctcaaggttcgggct
gagtcttttgacaactgggccaacaaagtgcgagtggccctggaagtggaggatggtcgg
aagcgcagttttgaagagctaagggcactggagtctgaggcccgtgagaggaggtttcct
aatagtgagctgcttcaacagttaaagaactgcctgactgaagcagaggcttgtgtttcc
caagtcctggggctggtcagtgttcaaggaacaaggatggaaactccactacttaccctg
cctgagctccagatcctctttgaacagatgggcagcctgccgtgtgctattaatcagatt
ggggatgttaaggatgtcctggaacaggtggaggcctatcaagttgaggcccgtgaggct
ctgacctcactgcctcctaatctagggcggttgcagtctttattggagaagggacagaag
ctgggtgtggaagtacctgaagcccatcagcttcagcaacaggtgcagcaggcacaatgg
ctagatgaagtgaagcaggcattggcaccctcagcccaaagggagtctctagtcatcatg
caaagactgttggtaatgggtgctaagatagcctcgagcccttctgtggacaaggccctg
gctgagcttcaagaactgctgaccattgcagaatgctgggaagaaaaagcccatttctgc
ctggaggccaggcaaaaacattcaccagccacattggaagctataatccgtgaggcggaa
aacatccctgttcacctgcctaacatccaggctctcaaagaagctctaactaaggcacac
gcttgggcagctgatgtgaatgaaattcagaacggtgaccactacccctgcttggatgac
ttggagggtctggtagcagtgggccgggacctgcctgtaggattggaggagctgaaacag
ctggagcttcaggtactgacagcacattcctggaaggaaagggcttccaagaccttcctc
aagaagaattcttgctacaccctgctggaggtcctttgtccatgtgcagatgctggctca
gaccgaattaagcgcagccggtggctggagaaagagctgggactatacaaatctgacaca
gagctactcggactgtctgcacaggatctcagggacccaggatctgtggtcatagccttc
aaggagggggaacagaaggaaaaggaaggtatcttggagcttcgtcgcatcaactcagcc
aagcgaagtccactggcatcatcaactacagtctcctctgcaacctccatctgtgtgtgt
gggcaggtgccagccagggtgggagcactacagtgtgacctgtgtcaggattggttccat
ggccagtgtgtgacagtgccccgcctcctcagctccctgcagcctagtcttacctcatcc
ccactgctggcctggtgggaatggaacaccaaattcctgtgcccactgtgcatgcgctca
cggcgaccacgcctggaaaccatcctggcactgctggtagccctgcaaagactacctgtt
cgtctgcctgagggtgaagctctacagtgcctcacagagagggccattggctggcagggc
cgtgccagacaggctctcgcctcgaaggatgtgactgctctgttggggcaactagctgag
cttcgccaacagctgcagactgaacccaggtccaggaaaccccatacctattcttcagcc
cctgcctctgaccccctcagagaagacagtggcaacactgtgcctaaggtcaagggattt
ctggagactggagaaagcatgaccaggcctgagaagttagcttcaggggaggtctcaggt
aaaagcaatctggaactgctatcctcgttgttgccacagttgactggtcctgtgttggaa
ctgccagaggcaacccggatccccctggaggagctcatgatggagggggatctgcttgag
gtgtccctggatgagaatcacagcatctggcagctgcttcaggctggacagcctccagac
atagagcggatccgcacacttctagagctcgagaaacctgagtatcaaagcagtcgtaca
aggggccaggcactggggaggcgacagcagagacggaagcagaaagtggatcaaggaagg
aagagtgaggatcttattcaagaagaggtggagtcaaaaaaggcccggagctcaggggaa
cagtcattcgaagaagaaacagaccatgaaaatctcttcctgtcatgccctagtgaacac
agtcccatcttggaagggaaccagaacagctga

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