Sciurus carolinensis (gray squirrel): 124974205
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Entry
124974205 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: intraflagellar transport protein 88 homolog
KO
K16474
intraflagellar transport protein 88
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ncar03037
]
124974205
Cilium and associated proteins [BR:
ncar03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
124974205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_6
TPR_8
TPR_12
TPR_7
TPR_19
ARM_TT21_4th
SNAP
HEAT_Nup120
RPN7
TPR_9
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
124974205
NCBI-ProteinID:
XP_047393606
LinkDB
All DBs
Position
Unknown
AA seq
481 aa
AA seq
DB search
MHRGTALQRGSKSMATYKPRSEASEETKLADTFILDFQALKLLIRILLTVLFFLPKITAK
IPSMAVTRPTATGYGSKTSLTSSMGRPMTGAIQDGVTRPMTAVRAAGFTKASLRGSAFNP
LDQSRGPAPPLETKNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKE
RVLVRQREXVTTPENINLDLTYSVLFNVACQYSANEMYAEALNTYQVIMKNKMFSNGGRL
KVNMGNIYLKQRNYSKAIKFYXMALDQIPSVHKEMRIKMMQNIGVIFIKTGQYSDAINSF
EHIMSMAPNLKAGFNLILSYFAIGDREKMKKAFQKLIAVPLEIDEDDKYISPSYDPHTNL
VIEAIKNDPLRQMERERKAMAEKYIMTAAKLIDPVIETSFAVGYDWCVEVVKASQYVELA
NDLEINKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLDHIDHAVIYVHE
N
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcacagagggacagccttgcaaagaggcagcaagagcatggcaacctataagccaaga
agtgaggcctcagaagaaaccaaacttgctgataccttcatcctggacttccaggctctg
aaactcttaatcagaattctgttaactgtgttgtttttcctccccaagataactgctaaa
ataccaagcatggcagttactagacctacagctactggatatgggtccaagacatccctg
acgtcatcaatgggaagaccaatgacaggggctattcaggatggagttactagacccatg
acagcagtgagagcagcaggttttaccaaagcatctttgagaggctctgcattcaaccca
cttgaccaatcaaggggccctgctcctcctttggaaaccaaaaacgaagatagtccagaa
gagaagattagacaattagagaagaaagtaaatgagttggtagaagaaagctgtattgct
aacagttgtggagacttaaaattggccttagaaaaggcaaaagatgcaggaagaaaagag
agagtcctggtgagacaacgggaataagttacaactccagaaaatatcaatttggattta
acttactcagttcttttcaacgtggcctgtcagtattcagctaatgaaatgtatgctgag
gcactaaacacatatcaagttataatgaaaaacaagatgtttagcaatggggggagactg
aaagtgaatatgggaaatatttacttaaagcaaagaaattattccaaagccattaaattc
tacnnaatggccttagatcaaatcccaagtgtccataaagaaatgaggattaaaatgatg
cagaacattggagttatatttattaaaactggtcaatattcagatgccattaattcattt
gagcatataatgagcatggcaccaaatctgaaagcaggcttcaacctgattcttagttat
tttgctattggagatcgagaaaaaatgaagaaagcattccagaaattgattgctgttcca
ttagaaattgatgaagatgataaatatatttcaccaagttatgacccccatactaaccta
gtgattgaagctataaaaaatgatcctctcagacaaatggaacgtgaaaggaaagccatg
gcagaaaaatacatcatgactgctgcaaaactcattgatcctgtaattgaaacatctttt
gctgtaggttatgattggtgtgtggaagtagtgaaagcttctcaatatgtagagctagcc
aatgatctggaaataaacaaggcaattacgtacttgagacagaaagacttcaaccaagca
gtagataccttaaaaatgtttgagaaaaaggacagtagagtgaaaagtgcagctgcaacc
aatctctcattcctgtattatctggatcacattgatcatgcagtcatatatgttcatgag
aattga
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