Sciurus carolinensis (gray squirrel): 124974628
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Entry
124974628 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: RNA-binding protein 12-like
KO
K24524
copine 1/2/3
K24526
RNA-binding protein 12
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncar03041
]
124974628
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ncar04990
]
124974628
Spliceosome [BR:
ncar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
124974628
Domain-containing proteins not elsewhere classified [BR:
ncar04990
]
Von Willebrand domain-containing proteins
VWA domain-containing proteins
124974628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Copine
RRM_1
C2
vWA-TerF-like
VWA
Motif
Other DBs
NCBI-GeneID:
124974628
NCBI-ProteinID:
XP_047393715
LinkDB
All DBs
Position
2:22148895..22182907
Genome browser
AA seq
1486 aa
AA seq
DB search
MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGELGEAFIVFATDEDARLGMMRT
GGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSGRVNLP
TTVPNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPSMGASFGSPTFSSTIPSTAS
PMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPP
MSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSSVKPLPIN
PDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL
KRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQTHPPPQTLPRSKSPSGQKRS
RSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRN
EADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDTIRKRLQNFSYDQREMMLNPXGDVN
SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARK
SEHLHRKKLMGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPANPAVPGMPAAGMPAA
GMPAAGMPAAGMPGPGMPAAGMPAAGMPTAGMPGAGIPAAGLPGAGMPAAGLPAAGMPGA
GMPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPLPPPGLGGAFGDARPGMPS
VGNSGLPGLGLEVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAP
GHLSGPPAFGPGPGPGPIHIGGPPGFGSSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQ
VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLMARCVTLVQLS
ISCDHLIDKDIGSKSDPLCVLLQDVGRGNWTELGRTERVRNCSNPEFSKTLQLEYHFETV
QKLRFGIYDIDNKTPELGDDDFLGGAECSLGQIVSSQMLTLPLMLKSGKPAGKGTITVSA
QELKDSRVVTVEVEARNLDKKDFLGKSDPFLEFFRQGDGXWHLAYRSEVIKNNLNXTWKR
FSVPFQHFCGGDPSTPIQVRCSDYDSDGSHDLIGTFHTSLAQLQAVPAEFECIHPEKQQK
KRSYKNSGTICVKICQVETEYSFLDYVMGGCQINFTVGVDFTGSNGDPSSPDSLHYLSPT
GVNEYLTALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPNNPYCAGIQG
IVDAYRQALPQVRLYGPTNFAPIINHVARFAAQAAYQGTASQYFVLLLLTDGAVTDVEAT
REAVVHASKLPMSVIIVGVGGADFEAMEQLDADGGPLCTRSGEASTRDIVQFVPYRRFQN
APREALAQTVLAEVPTQLVSYFKAQGWAPFKVPPSPAKGPAQNSQA
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggtcatccgtttgcaaggtctcccaattgtggcggggaccatggacattcgc
cacttcttctctggattgaccatccctgatgggggcgtgcatattgtagggggtgaactg
ggtgaggctttcatcgtttttgccactgatgaagatgcaaggcttggtatgatgcgcaca
ggtggtacaattaaagggtcaaaagtaacactattgttgagtagtaaaacggaaatgcag
aatatgattgaactgagtcgtaggcggttcgaaactgccaacctagatataccaccagca
aatgctagtagatcaggaccaccacctagctcaggaatgagtggcagggtaaacttgcct
acaacagtacccaactttaataatccttcaccaagtgtagttactgctaccacttctgtt
catgaaagcaacaaaaacatacagacattttccacagccagcgtaggaactgctcctcca
agtatgggggcttcttttgggagcccaacattcagctcgaccattccaagtacagcctct
ccaatgaacacagtcccaccgccacctattcctccgatcccagccatgccatctttgcca
ccaatgccatccattcctccaataccagttcctcctccagtacctacattaccccccgtg
cctcctgtgcccccaattcccccagtcccttctgtgccaccaatgaccccactgccaccc
atgtcaggcatgccacctttgaatccgccacccgtggcacctttacctgctggaatgaat
ggctctggagcacctatgaatctgaacaataacctgaaccctatgtttttgggtccactg
aatcctgttaaccctatccagatgaactctcaaagcagcgtgaagccacttcccatcaac
cctgatgatctgtatgtcagtgtgcatggaatgcccttttctgcaatggaaaatgatgtc
agagagtttttccatgggctccgtgttgatgccgtgcatttgttgaaagatcatgtaggc
cgaaataatgggaatggattggttaagtttctttcccctcaagatacatttgaagctttg
aaacgaaacagaatgctgatgattcaacgctatgtggaagttagccctgccacagagaga
cagtgggtagcagctggaggacatatcacttttaagcaaagtatgggaccttctggacaa
acccatccccctcctcagacactgcccaggtcaaaatcgcccagtgggcagaaaaggtca
aggtcaagatcaccacatgaggctggtttttgtgtttacttgaaagggctaccatttgaa
gcagaaaacaaacatgtcattgatttttttaaaaagttggatattgtggaagatagtatt
tatatagcttatggacccaatgggaaagcaactggtgaaggcttcgtagagtttaggaat
gaggctgactataaagctgctctgtgtcgtcataaacaatacatgggcaatcgctttatt
caagttcatccaattactaagaaaggtatgctagaaaagatagatacaattcgaaaaaga
ctccagaacttcagctatgaccagagagaaatgatgttaaatccgngaggggatgtcaac
tctgccaaagtctgtgcccacataacaaatattccattcagcattaccaagatggatgtt
cttcagttcctggaaggaatcccagtggatgaaaatgcagtacatgttcttgttgataac
aatgggcaaggtctaggacaggcattggttcagtttaaaaatgaagatgatgcacgtaag
tctgaacacttacaccgtaaaaaattaatggggagagaagcatttgttcatgtagttacc
ctagaagatatgagagagattgagaaaaatccccctgcccaaggaaaaaaggggctaaag
atgcctgtgccggctaatcctgcagtaccaggaatgcctgctgcgggcatgcctgctgcg
ggcatgcccgccgcgggaatgcccgcagcgggaatgcccggccctggcatgcctgctgcg
ggcatgcctgctgctggcatgcccactgctggtatgcctggtgcaggcatacccgctgcg
ggattgcctggtgcgggaatgcctgctgcaggactgcctgctgcaggaatgcctggtgca
ggaatgcccagcgcaggaggtgaagaacatgctttcctgacagtaggatcaaaggaggcc
aacaatggacctccatttaacttccctggtaattttggtgggtcaaatgcctttgggcca
ccactgcctcctccaggattaggaggggcctttggtgatgctaggcctggtatgccttca
gttggaaacagtggtttgcctggtctaggactggaagttcctggttttggaggtggaccc
aataatttaagtgggccatcaggatttggagggggccctcagaattttggaaatggtcct
ggtagcttaggtggccctcctggctttggaagtggccctcctggtcttggaagtgcccct
gggcatttgagtggaccaccagcctttggccctggccctggccctggcccaatccatatt
ggtggtccacctggctttggatctagttctgggaaaccaggacctacagtaattaaagtg
cagaacatgcccttcactgtgtctattgatgagattttagatttcttttatggctatcaa
gtaatcccaggctcagtgtgcttaaaatacaatgaaaaaggtatgcccacaggtgaagcc
atggtggccttcgaatctcgggatgaagccacagctgctgtcattgacttaaatgacagg
cctataggctcaagaaaagtaaaacttatggcccgctgtgtgaccttggttcagctgtct
atttcctgtgaccacctcattgacaaggacatcggctccaagtcagacccactctgcgtc
cttttacaggatgtgggaaggggcaactggactgagcttggccgaactgagcgagtacgg
aactgctcaaatcctgagttctccaagactctgcagcttgagtatcactttgaaacagtc
cagaaactacgcttcggaatctatgacatagacaacaagacaccagagctgggggatgat
gacttcctagggggagctgaatgttccctaggacagatcgtgtccagccaaatgctgact
ctacccttgatgctaaagtctggaaaacctgctgggaagggaaccattacggtctcagct
caggagctgaaggacagtcgtgtagtaacagtggaggtagaagccagaaaccttgataag
aaggacttcctgggaaaatctgatccattcctggagttcttccgccagggtgatgganaa
tggcacctggcatacagatctgaggtaatcaagaacaacctgaatnctacttggaagcgc
ttctcagttccctttcagcatttctgtggtggagaccccagcacacccatccaggtacgc
tgctcagactatgacagtgatgggtcacatgatctcattggtactttccacactagcttg
gcccagttgcaggcagtcccggccgagtttgaatgcatccaccctgagaagcagcagaaa
aagagaagctacaagaactctggaactatctgtgtcaagatttgccaggtagaaacagaa
tattccttcctggactatgttatgggaggctgccaaatcaacttcactgtgggtgtggac
ttcactggctccaatggagatccctcctcacctgactccctgcactacctgagtcctaca
ggagtcaacgaatacctgacagcgctgtggagtgtgggcagtgtggttcaagactatgac
tcggacaagctgttcccggcatttggatttggggcccaggtgccccctgattggcaggtc
tcacatgaatttgccttgaacttcaatcccaataacccatactgtgcaggcatccagggc
attgtggatgcctaccgccaagccctgccccaagtacgcctctatggccccaccaacttc
gcacccatcatcaaccatgtggccaggtttgcagcccaggctgcatatcaggggactgcc
tcgcaatacttcgtgctgttgctgttgactgatggtgctgtgacagatgtggaagccaca
cgtgaagctgtggtgcatgcttcaaaactgcccatgtcagtgataattgtgggtgttggt
ggtgctgactttgaggccatggaacagctggacgctgatggtgggccactgtgtacacgc
tctggagaggcatctacccgtgacatagtacagtttgtgccttatcgcagatttcaaaat
gctcctcgggaagcactggcacagactgtacttgcagaagtgcctacacagctggtctcc
tacttcaaggctcagggttgggctccgttcaaggtgcctccatccccagccaaaggtcct
gcacagaactcccaagcctag
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