Sciurus carolinensis (gray squirrel): 124975936
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Entry
124975936 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: dmX-like protein 2
KO
K24155
rabconnectin-3a
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
124975936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124975936
Membrane trafficking [BR:
ncar04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
124975936
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
124975936
RAVE complex
124975936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
EIF3I
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_DCAF12
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_LRRK2
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_EIPR1
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
124975936
NCBI-ProteinID:
XP_047394402
LinkDB
All DBs
Position
2:102105509..102277510
Genome browser
AA seq
3058 aa
AA seq
DB search
MHLHQVLTGAVNPGDNCYSVGSVGDVPFTAYGSGCDIVVLASDFECVQIIPGAKHGNIQV
SCVECSNQQGRIAASYGNAVCIFEPLGINSHKRNCQLKYQWLKTGQFFLSSVTYNLAWDP
QDNRLLTATDSIQLWAPPGGDILEEEEEIDNKIPPVLNDWKCVWQCKTSVSVHLMEWSPD
GEYFATAGKDDCLLKVWYPMTGWKSSIIPQDHHEVKRKQTATQFSFVYLAHPRAVTGFSW
RKTSKYMPRGSVCNVLLTSCHDGVCRLWAETLLPEDCLLGEQICETTTSSVASTLSHSGR
QKDRIQHALETIHHLKNLRKGQRRSSVLVTHTDLMPDQMATHEVQRHISHHANALCHFHI
AASINPATDIPNALVGTAFNIDDGNGGFVVHWLNNKEFHFTSSTEIFMHQLRKLTEKQLD
HESDETDREDEERSQEERERGLHMKLDHELSLDRESETGTGSSEHEDGEREGSPRTYSQP
NLSMPLPTVLLDRKIEMLLTEWNKNPDMLFTIHPVDGTFLVWHVKYLDEYNPGIFRQVQV
SFSSRIPVAFPSGDASSLSKNIMMYACISATKDSHHTPLHQELMSADSPHESQPHSRSHT
ANVNILAPTVMMVSKHIDGSLNQWAVTFADKSAFTTVLTVSHKFRYCGHRFHLNDLACHS
VLPLLLTSSHHNALLTPESDCQWDSDSKLSRLMDPVKNIKGLSKQPLRNAATRTFHDPNA
IYSELILWRVDPIGPLSYTGGVSELARINSLHTSAFSNVAWLPTLIPSYCLGTYCNSASA
CFVASDGKNLRLYQAVVDARKLLDELSDPESSKLIGEVFNIVSQQSTARPGCIIELDAIT
DQCGSNTQLLHVFQEDFIIGYKPHKEDIEKKESEIFFQPSQGYRPPPFXEKFFLVVIEKD
SNNYSILHMWHLHLKSVQACLAKASETVSSESLLSVPGQKNVESSPETSPGISPMPHSSS
IANLQTASKLILSSRLVYSQPLDLPEAVEVIRATPSAGHLSSSSIYPVCLAPYLVVTTCS
DNKVRFWKCCMETNQQNNTNNEKETYHWRRWPLMNDEGEDNTSTVSIVGRPVAVSCSYTG
RLQXGLQTPIHHNGFVSKEFSMHVCIFECESTGGSEWVLEQTIHLDDLVKVGSVLDSRVS
VDSNLFVYSKSDALLSKDRYLIPNIKHLVHLDWVSKEDGSHILTVGVGANIFMYGRLSGI
VTEQTNSKDGVAVITLPLGGSIKQGVRSRWVLLRSIDLVSSVDGTPSLPVSLSWVRDGIL
VVGMDCEMHVYAQWKHAVKFGDIEADNTDAEETAVQDHSTFKANMLSRKSIVEGTTIADD
VFCSPTVVQDGGLFEAAHVLSPTLPQYHPTQLLELMDLGKVRRAKAILSHLVKCIAGEVA
IVRDADAGEGTKRHLSRTISVSGSTAKDTVTIGKDGTRDYTEIDSIPPLPLYALLAADQD
TSYRIAEESTKMPQSFEDHTESQPEDQYSELFQIQDITTDDIDLEPEKRESKSKVINLSQ
YGPAYFGQEHARVLSSHLMHSSLPGLTRLEQMFLVALADTVATTSTELDENRDKNYSGRD
TLDECGLRYLLAMRLHTCLLTSLPPLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAI
QRGDPQWSELRAMGIGWWVRNINTLRRCIEKVAKASFQRNNDALDAALFYLSMKKKAVVW
GLFRSQHDEKMTSFFSHNFNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEV
CLEKMEDIQLAMVIARLYESEFETSATYISILNQKILGCQKDGSGFNCKRLHPDPFLRSL
AYWVMKDYTRALDTLLEQTPKEEDEQQVIIKXCNPVVFSFFITTFEHHPLLLRRNLXSPE
GTLATXGLKTEKNFADKINLIERKXFFTTANAHFKVGCPVLALEVLSKIPKXTKISALSA
KKDPLDFVSKDVGDISAESKTMSNGNGSSGTDWSNITSSQXDWSRPVVKVDEEPLTLDWG
EDHDSALEEDEDAVGLVMKSTDASGKSEQVRSPWDPNMLLTPQEEDHPEGDTEVDVIAEQ
LKFRACLKILMTELRTLATGYEVDGGKLRFQLYNWLEKEXAALHEICNHESVIKEYSSKT
YSRIESDLLDQEEMVDKPDMGSYERHQIKDEVLQAKREHAERRSXWLQKNQDLLRVFLSY
CSLHGAQGGGWPQXEWNSNFLLQESQQETTVKQLQSPLPLPTTLPLXSASIASTQTVIAN
PVLYLNNHIHDILYTIVQMKTPPHPILEDVKVHTLHSLAASLSASIYQALCDSHSYSSQT
EGNQFTGMAYQGLLLSDRRRLRTESIEEHATPNSYPAQWPGVSSLISLLSSAQDEDQPKL
NVLLCEAVVAVYLSLLIHALATNSSNELFRLAAHPLNNRMWAAVFGGGVKLVVKPRRQSE
SISAPPVPSEDIDKHRRRFNMRMLVPGRPVKDATPPPVPAERPSYKXKFIPPELSMWDYF
VAKPFLPLSDSGVIYDSDESIHSDEEDDDAFFSDTQIQEHQDPNSYSWALLHLTMVKLVL
HNVKNFFPIAGLEFSELPVTSPLGLAVIKNLENWEQILQEKMDHFEGPPPNYINTYPTDL
SVGAGPAILRNKAMLEPENTPFKSRDSSALPVKRLWHFLVKQEVLQETFIRYIFTKKRKQ
SESVEEHVEQVKQNCIAEDCHIKVEADLGYPGGKAKIIHKESDMIMAFAVNKANCNEIVL
ASTHDVQELDVTSLLACQSYIWIGEEFDRESKSSDDIDYRGSTTTLYQSSAVSLPASQVH
PPSSLPWLGSGQTSTGASVLMKRNLHNVKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQL
VCFRQAGNARVTRLYFNSQGNKCGVADGEGFLSIWQVNQTASNPKPYMSWQCHSKAASDF
AFITSSSLVATSGQSNDNRNVCLWDTLISPGNSLIHGFTCHDHGATVLQYAPKQQLLISG
GRKGYVCIFDIRQRQLIHTFQAHDSAIKALALDPCEEYFTTGSAEGNIKVWRLTGHGLIH
SFKNEHAKQSIFRNIGAGVMQIDIIQGNRIFSCGADGTLKTRVLPNAFNIPNRILDIL
NT seq
9177 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgcatcaggtcctcaccggggctgtcaaccctggagacaactgctactctgtg
ggcagcgtcggggatgtccccttcacggcatatggatcaggctgtgatattgttgttttg
gcaagcgactttgaatgtgtgcagatcattcctggtgctaaacatggaaacattcaagtc
agctgtgtggagtgttctaaccaacaaggaagaattgcagcttcatatggtaatgctgtt
tgtatttttgagcctctgggcataaattctcataagagaaattgtcaactcaagtatcag
tggcttaaaactgggcagttttttttgagttccgtgacatataacttagcatgggaccct
caagataacagattgttgacagcaactgattctattcagttgtgggctcctccaggaggt
gatattctggaagaggaggaagaaattgataataaaattcctcccgttttaaatgattgg
aagtgcgtctggcagtgcaaaacctcagtctctgtacatttgatggaatggtctcctgat
ggtgaatattttgctactgctggaaaggatgactgtcttttgaaagtatggtatcctatg
actggttggaagtcttcaattattcctcaggatcatcatgaagtgaaaaggaaacagact
gctactcaattttcctttgtttacttggcacatccccgggcagtgacaggtttttcatgg
cgtaaaactagcaagtatatgcccaggggttctgtctgtaatgtgctgttaacttcatgc
catgatggtgtatgccgactctgggcagaaactttattaccagaagactgtcttttgggt
gagcagatttgtgagactaccacatccagcgttgccagcaccctttctcattcgggaaga
cagaaagacagaatacaacatgctcttgagaccatacaccatttgaaaaatttaaggaaa
ggacaaaggagatcttctgttcttgtaactcacactgatttaatgcctgaccagatggca
acacatgaagttcagagacacatttctcaccatgccaatgcactgtgtcattttcacatc
gcagcaagcatcaaccctgccacagatattccaaatgccctggttggcactgcatttaac
attgatgatggaaatgggggatttgtagttcattggttaaacaacaaggaatttcatttt
acatcatcaactgaaatatttatgcatcagttacgaaaacttacagaaaaacagttagat
catgaaagtgatgaaacagatagagaagatgaagaacgttcacaggaggaaagagaaaga
ggtttacatatgaaactagatcatgaattatccctggatagagaatctgagactggtaca
ggatcatcagaacatgaagatggagaaagagagggaagtcctagaacctattcacaacct
aacctctcaatgccactgcctacagttctgcttgatcggaagattgaaatgctactaaca
gaatggaataagaatcctgacatgctttttacaatacaccctgtagatggtacctttcta
gtgtggcatgtaaagtatttggatgaatataatcctggaatatttagacaagttcaggtt
tctttttcttctcggattcctgttgcatttccctctggtgatgcaagctctcttagtaaa
aatatcatgatgtatgcctgtataagtgctacgaaagattctcaccatactccattacac
caggagctgatgtctgcagacagtcctcatgaatcacaaccacactctagatcacacact
gcaaacgtgaacattttagcacccacagtaatgatggtctctaaacacatagatgggtct
ttaaatcagtgggcagtcacatttgctgataaatctgcctttaccactgttctaactgta
tcccacaaatttagatattgtggtcatcgatttcacctcaatgacttggcatgtcattca
gttttaccactgttactgacatcttctcatcataatgctttgttgactcctgaatcagat
tgtcagtgggactcagacagtaaattaagtagattaatggatcctgtaaaaaatataaaa
ggtttatcaaaacaacctctcaggaatgcagcaacccgtacatttcatgacccaaacgca
atctacagtgaacttattctttggcgtgttgacccaatagggcctttgtcatacactgga
ggagtgtcagaattggctcgaattaactctttacatacctcagccttctctaatgtggct
tggcttccaactcttattcccagttattgccttggcacatactgcaattctgcaagtgct
tgctttgttgcttctgatggcaaaaatctgagattatatcaagctgtggtagatgcaaga
aaattattggatgaactatcagacccagagtcttcaaaacttattggagaagtgtttaat
attgtgagccaacagtctactgctcgacctggctgcattattgaacttgatgcaataact
gaccaatgtggctcaaatacacagttgcttcatgtatttcaagaagacttcattatagga
tataaaccacataaggaagatatagagaaaaaggaatcagaaatattttttcagccatca
caaggatatcgtccaccaccatttncagaaaagttctttctagtggtaattgaaaaggac
agcaataattactctattctccatatgtggcaccttcaccttaaatctgtacaagcatgt
ttagccaaagcttcagaaactgtttcatctgagagtctactttcagtccctggacagaag
aatgtggagtcatctccagaaacctcccctggcataagccccatgccacattcttcatca
attgccaatctgcaaactgctagtaaacttattctgagttctagactggtatatagccaa
cctcttgatctcccagaagcagttgaagtgataagagcaacaccttcagcagggcatctg
agttcctcttcaatttatccagtgtgccttgcaccttatttagtggttacaacttgttct
gacaataaagtacgcttctggaaatgttgtatggaaacgaaccaacaaaataatacaaac
aatgagaaagaaacctatcattggaggagatggcccctaatgaatgatgaaggagaagat
aataccagtacagtgagcattgtgggaagaccagttgctgttagctgttcatacacaggt
cgtctgcagnntggcttacaaacacctatccatcataatggttttgtttctaaagaattt
tccatgcatgtttgtatatttgaatgtgaatctacgggagggtcagaatgggttttggaa
caaacaattcatctcgatgatttggttaaggttggaagtgtacttgattcaagggtcagt
gttgatagtaatctgtttgtgtatagcaaatcagatgcacttttaagcaaagatagatat
cttattcccaatatcaagcatttagtacatttggactgggtgtcaaaagaagatggctcc
cacattctcacggtgggggttggcgctaatatcttcatgtatgggagactttcaggaatt
gtaactgagcaaaccaacagtaaggatggagtagctgtcattactttaccactaggtggt
agtatcaaacaaggagttaggtcgagatgggttcttcttagatctatagacttggtgtct
tctgttgatggtaccccttcactgcctgtttctctttcttgggtaagagatgggatattg
gtggtgggaatggattgtgaaatgcatgtatatgcccagtggaagcatgctgttaaattt
ggagacattgaggctgataatactgatgcagaagagacagcagtacaagaccattctacc
tttaaagctaacatgttgtcaagaaaaagtattgttgaaggaacaactattgctgatgat
gttttttgttcaccaactgtagttcaagatggtggcttatttgaggctgcacatgtactt
tcccctactcttcctcagtatcatccaactcaactattagaattaatggatttaggtaaa
gttagaagggctaaagccattctctctcatttagtaaaatgtattgcaggtgaagttgca
atagttagagatgctgatgctggggaaggaaccaagcggcatctttctcgaaccattagt
gtaagtggcagtacagcaaaggatacagtcaccatagggaaagatggtactcgagattat
actgagatagattctattcctccactaccactatatgcactgcttgctgcagatcaggat
acatcgtacagaattgcagaagaaagtacaaaaatgccacagagctttgaagatcatact
gaaagtcagccagaggatcagtattctgagctgttccaaatccaggatataacaacagat
gatattgatttagagccggaaaagagagaaagcaaatcaaaagttataaatctttctcaa
tatggaccagcctactttggccaggaacatgcgagggtactttcaagtcatcttatgcac
tcaagtctaccaggccttactcgtttggagcagatgttccttgtagcattggctgataca
gtggctaccaccagtactgaacttgatgaaaacagagataagaattactcaggaagagac
accttagatgaatgtggtttgagatacttgttagctatgcgcttgcacacatgcctttta
acatcactgcctcctttataccgagtacagctacttcatcaaggtgtttctacatgccat
tttgcttgggcttttcattctgaggctgaggaagaactgattaatatgattccagcaatt
cagagaggggaccctcagtggtctgagttaagagctatgggaataggatggtgggtgagg
aatattaacacacttcgaagatgcattgaaaaggttgccaaagcttcttttcaaaggaac
aatgatgctttagatgctgcattattctatctttcaatgaagaagaaagcagtagtgtgg
ggtctgtttaggtcacaacatgatgaaaaaatgacatcatttttcagtcacaactttaat
gaagatagatggcggaaagctgctttgaaaaatgctttttctttacttggaaaacagcgt
tttgaacaatctgctgcttttttcttgttagcgggttcactgaaagatgccatagaggta
tgtcttgaaaaaatggaagatattcagctagctatggttattgcccgcttatatgaatct
gaatttgagacttcagccacttacatatccatcttgaatcagaagattttgggttgccaa
aaggatggctcaggattcaattgcaaaagattacatcctgatcctttcctgcgtagtctt
gcctattgggtgatgaaagattacacccgcgccttggatacattactggaacaaacacca
aaggaggaagatgaacaacaagttatcatcaaantctgtaacccagtggtatttagtttt
tttataactaccttcgaacaccatcctttgcttcttcgaagaaaccttngctcccctgaa
ggaaccttggcaacctgaggtctcaaaactgagaaaaattttgctgacaaaattaacctc
atagagagaaaantattctttaccactgcaaatgctcattttaaggttggatgtcctgtt
ctagccctggaggtactttccaaaattccaaagntaaccaaaatatctgccttatctgca
aaaaaagatccacttgactttgtttcaaaagatgtgggtgatatatctgcagaatcaaaa
acgatgagcaatggtaatggaagttctggcactgactggtcaaacataacttcatcacaa
nttgactggagtcggccagttgttaaagttgatgaggaacctcttactcttgattggggt
gaagatcatgatagtgccctagaagaggatgaagatgctgttggtttagtaatgaaaagt
acggatgccagtggaaaaagtgaacaagtcagaagtccttgggaccctaatatgttattg
actcctcaggaagaagatcatcctgaaggcgatacggaagttgatgtgattgctgaacaa
ctaaaattcagagcttgtttaaagatccttatgaccgaactaagaactttggcgacaggt
tatgaagtagatggagggaagctcagatttcaactctataactggcttgaaaaggaanat
gctgccttgcatgagatatgcaatcatgaatcagttattaaagaatattccagtaaaaca
tattccagaatagagagtgatcttctggatcaggaagaaatggtggacaaaccagatatg
ggttcctatgagcgccaccaaatcaaagacgaagtattgcaggctaaacgagagcatgca
gaaagacgaagtntgtggctgcagaaaaaccaagatctccttagagtgtttcttagttac
tgtagccttcatggggcccaaggtggtggttggcctcagtaagaatggaactcaaatttt
ttgctacaagaatcacagcaggaaactacagtaaaacagctccagtctccactaccattg
cctaccaccctacctctgncttcagcaagtattgcgtcaacacaaacagtcatagctaat
cctgtattgtacttaaataatcacatccatgatatactttatactattgttcagatgaaa
acaccacctcatcccatattggaagatgtgaaggtgcacacacttcattcactagcagca
tcactttctgcatcaatttaccaagcattatgtgacagtcatagctacagcagtcaaaca
gaaggaaatcagtttacaggaatggcttatcaaggacttcttttaagtgatcgtcgaaga
ctgaggacagaaagcattgaagaacatgcaacaccaaactcatatcctgctcagtggcct
ggtgtgagctcgcttattagtcttttgagttcagcccaagatgaagaccagccaaaattg
aatgttttgttgtgtgaagctgttgttgctgtttacttaagtttattgatacatgctctt
gccacaaattcttccaatgaactgtttcggctcgcagcccacccattaaacaaccgaatg
tgggctgctgtttttggagggggtgtgaaacttgttgtgaaacctcgaagacaatcagaa
agtatttcagcacctcctgttccttctgaagacatagataaacaccgtaggagatttaac
atgcgaatgctggtccctggaaggcctgtaaaagatgctacccctccaccagtgcctgca
gaaagaccatcttacaaangaaaatttattcctcctgaacttagtatgtgggattacttt
gttgcaaagccatttcttcctttgtctgatagtggtgttatatatgattctgatgaaagt
attcatagtgatgaagaagatgatgatgcctttttctcagacacacaaatacaggagcac
caagatccaaattcctatagctgggctcttctgcatttgacaatggttaaactagtactt
cacaatgtcaagaacttctttcctattgctggactagaattctctgagctgcctgtaaca
tcacccttgggtcttgctgtaattaaaaacttggagaactgggaacagatcctgcaagag
aaaatggatcactttgaaggtccaccccctaactatatcaacacatatccaactgatctt
tcagtgggagctggaccagctattcttcgaaataaagcaatgctggaacctgaaaatact
ccattcaagtctcgagattcttctgcacttccagtcaagcgactttggcatttccttgtt
aaacaagaagttcttcaagagacatttattagatatattttcactaagaaaagaaagcag
agtgagtctgtagaagaacatgtggagcaggtcaaacaaaactgcatagcagaagattgc
cacatcaaggttgaggctgacctgggctatcctggaggaaaggcaaagatcattcacaag
gaatctgacatgatcatggcatttgctgttaataaggcaaactgtaatgaaattgtttta
gcttcaacacatgatgttcaagaacttgatgttacttctctattggcctgtcagtcatat
atttggattggagaagaatttgacagagagtctaaaagttcagatgatattgattatcgt
ggctccaccacaaccctttatcagtccagtgcagtatcccttccagcaagtcaggtgcat
ccaccttcatctctgccctggctgggcagcggacagaccagcactggtgctagtgtgctt
atgaaaaggaatctacataatgttaagagaatgacctcacaccctgtccatcaatactat
ctcacaggtgctcaggatggcagtgtgcgaatgtttgagtggacacggcctcagcaactt
gtctgcttccgtcaagctggcaatgcaagggttactagactctattttaactcccaaggc
aacaagtgtggtgttgcagatggtgagggttttctgagtatctggcaagttaaccaaact
gcatcaaatcctaaaccttacatgagttggcaatgccacagtaaagccgcaagtgacttt
gcatttattacctcttcaagtctagttgccacatctggacagtccaatgataatagaaat
gtatgcctctgggatacattaatatcacctggaaacagcctcattcatggtttcacatgc
catgatcatggtgccacagtacttcaatatgcaccaaaacagcaactcctcatctctgga
ggtaggaaaggatatgtctgcatttttgatatcagacagagacagctaatccacacattc
caggcacatgactcggctattaaggctctggctctggatccctgtgaggaatattttact
acaggttcagcagaaggtaacataaaggtttggagattgacaggccatggcctaattcat
tcatttaaaaatgaacatgctaagcagtccatattcagaaacattggagctggagtcatg
cagattgacatcatccagggcaatcggatcttctcctgtggtgcagatggcacactgaaa
accagggttttgcccaatgcttttaacatccctaatagaattcttgacattctgtag
DBGET
integrated database retrieval system
