Sciurus carolinensis (gray squirrel): 124975943
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Entry
124975943 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR1-like
KO
K10625
E3 ubiquitin-protein ligase UBR1 [EC:
2.3.2.27
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124975943
Enzymes [BR:
ncar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124975943
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
UBR box proteins
124975943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRT6_C
UBR1-like_wing
zf-UBR
ClpS
Motif
Other DBs
NCBI-GeneID:
124975943
NCBI-ProteinID:
XP_047394417
LinkDB
All DBs
Position
2:109463980..109642726
Genome browser
AA seq
1753 aa
AA seq
DB search
MADEEAEGAERMEVSTELPQTPQRVASWWDQQVDFYAAFLYHLAQWVPEIYFAEMDPDLE
KQEESVQMSIFTPLEWYLFGEDPDICLEKLKHSGAFQLCGKVFKSGETTYSCRDCAIDPT
CVLCMDCFQNSVHKNHRYKMHTSTGGGFCDCGDTEAWKTGPFCINHEPGRAGTTKENLRC
PLSEEVIVQARKIFPSVIKYIVEMTIWEEEKELPPELQIREKNERYYCVLFNDEHHSYDH
VIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAYAACQEAKEDIKSHSENVSQHPLHV
EVLHSEVMAHQKFALRLGSWMNKIMSYSSDFRQIFCQACLKEEPGSENPCLISRLMLWDA
KLYKGARKILHELIFSSFFMEMEYKKLFAMEFVKYYKQLQKEYISDDHDRSISVTALSVQ
MFTVPTLARHLIEEQNVISVITETLLEVLPEYLDRNNKFNFQGYSQDKLGRVYAVICDLK
YILISKPTIWTERLRMQFLEGFRSFLKILTCMQGMEEIRRQVGQHIEVDPDWEAAIAIQM
QLKNILLMFQEWCACDEELLLVAYKECHKAVMRCSTSFVSSNKTIVQLCGHILETKSYRV
SEDLVSIHLPLSRTLAGLHVRLSRLGAVSRLHEFVPFEDFQVEVLVEYPLRCLVLVAQVV
AEMWRRNGLSLISQVFYYQDVKCREEMYDKDIIMLQIGASLMDPNKFLLLVLQRYELADA
FNKTISTKDQDLIKQYNTLIEEMLQVLIYIVGERYVPGVGNVTKEEVTMREIIHLLCIEP
MPHSAIAXNLPENENNETGLENVINKVATFKKPGVSGHGVYELKDESLKDFNMYFYHYSK
TQHSKAEHMQKKRRKQENKDEALPPPPPPEFCPAFSKVVNLLNCDIMMYILRTIFERAVD
TDSNLWTEGMLQMAFHILALGLLEEKQQLQKXPEEEVTFDFYHKASRLGSSAMNAQNIQM
LLEKLKGIPQLEGQKDMITWILQMFDTVKRLREKSCLIIATTSGLESIKNDEITHDKEKA
ERKRKAEAARLHRQKIMAQMSALQKNFIETHKLMYDNTSEMPGKEDSIMEEESTPAVSDY
SRIALGPKRGPTVTEKEVLTCILCQEEQEVKIENNAMVLSACVQKSTALTQHRGKPIELP
GETLDPLFMDPDLAYGTYTGSCGHVMHAVCWQKYFEAVQLSSQQRIHVDLFDLESGEYLC
PLCKSLCNTVIPIIPLQPQKINSENAEALAQLLTLTRWIQTILARISGYNMKHSKGENPA
IPVLFNQGMGDSTFEFHSILSFGVQSSIKYSNSIKEMVILFATTIYRIGLKVPPDETDPR
VPMMTWSTCAFTVQAIENLLGDEGKPLFGALQNRQHNGLKALMQFAIAQRITCPQVLIQK
HLIRLLSVVLPNLKSEDTPCLLSIDLFHVLVGAVLAFPSLYWDDTVDLQPSSISSSYNHL
YLFHLITMAHMLQILLTIDTGLPLAQVEEDSEEARSASSFFAEVSQYTSGCIGCDIPGWY
LWVSLKNGITPYLRCAALFFHYLLGVTPPEELLTNSAEGEYTALCSYLSLPTNLFLLFQE
YWDTVRPLLQRWCADSVLLSYLKQKSTVVRYPRKRNSLIELPDDYSCLLNQASHFRCPRS
ADDERKHPVLCLFCGAILCSQNICCQEIVNGEEVGACIFHALHCGAGVCIFLKIRECRVV
LVEGKARGCAYPAPYLDEYGETDPGLKRGNPLHLSRERYRKLHLVWQQHCIIEEIARSQE
TNQMLFGFNWQLL
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagaggccgagggtgcggagaggatggaagtcagcaccgagttgccccag
acccctcagcgagtggcatcttggtgggatcagcaagttgatttttatgctgcttttttg
tatcatttggcacaatgggtgccagaaatttattttgctgaaatggatccagacttggaa
aagcaagaggagagtgtgcaaatgtcaatattcactccattggaatggtatttatttgga
gaggatccagatatttgcctagagaaattaaagcacagtggtgcatttcagctctgtggg
aaggttttcaaaagtggagagacaacatattcttgtagggactgtgcaattgatccaact
tgcgtactctgtatggactgcttccagaatagtgttcataaaaatcatcgttacaagatg
catacctctactggaggagggttttgtgactgtggagacactgaggcatggaaaactggc
cctttttgtataaatcatgaacctggaagagcaggtactaccaaagagaatttacgttgt
ccattgagtgaagaggtaattgttcaagccaggaaaatattcccttcggtgataaaatac
attgtagaaatgactatatgggaagaggaaaaggaactgcctcctgaattgcagataagg
gagaaaaatgaaagatattattgtgtcctttttaatgatgaacaccattcatatgaccac
gtcatatacagtctacaaagagctcttgactgtgaactcgcagaggcccagttgcacacc
actgccatagacaaagagggtcgtcgggctgttaaagcaggtgcttatgctgcttgtcag
gaagcaaaagaagatataaagagccattcagaaaatgtctctcaacacccacttcatgta
gaagtattacactctgaggttatggctcatcagaaatttgctttgcgtcttggctcctgg
atgaacaaaattatgagctattcgagtgactttaggcaaatcttttgccaagcatgcctt
aaagaagaacctggctctgagaatccatgtctcattagccggttgatgctttgggatgca
aagctttacaaaggtgcccgtaagatccttcatgaattgatcttcagcagtttttttatg
gagatggaatacaaaaaactctttgccatggaatttgtgaagtattataaacaactacag
aaagaatacatcagtgatgatcatgacaggagtatctctgtaactgcactctcagttcag
atgtttactgtccctactctggctcgacatcttattgaagaacagaatgttatctctgtc
attactgaaactctgctagaagttttacctgagtacttggacaggaacaataaattcaac
ttccagggttatagccaggacaaattgggaagagtatatgcagtaatatgtgacctaaaa
tatatcctgatcagcaagcctacaatatggacagaaagattaagaatgcagttccttgaa
ggttttcgatcttttttgaagattcttacctgtatgcagggaatggaagaaatcagaaga
caggttgggcaacatattgaagtagatcctgattgggaggctgccattgctatacaaatg
caattgaagaatattttactcatgttccaagagtggtgtgcttgtgatgaagaactctta
ctagtagcttataaagaatgtcacaaagctgtgatgaggtgcagtacaagttttgtatcc
agcaacaagacaatagtacaattatgtggtcatattttagaaactaagtcctacagggta
tctgaggatcttgtaagcatacatctgccactctctaggactcttgctggtcttcatgtg
cgtttaagtaggctgggcgctgtttcaagactgcatgaatttgtaccttttgaggatttt
caagtagaagtactagtggaatatcctttgcgttgtttggtgttggttgcccaggttgtt
gctgagatgtggcgaagaaatggtctctctctcattagccaggtattttattaccaagat
gttaagtgcagagaagaaatgtatgataaagatatcatcatgcttcagattggtgcatct
ttaatggatccaaacaagttcttgttactggtacttcagaggtatgaacttgctgatgct
tttaataagaccatatccacaaaagaccaggatttgattaagcaatataatacattaata
gaagaaatgcttcaggttctcatctacattgtgggagagcgttatgtacctggagtggga
aatgtgaccaaagaagaggtcacaatgagagaaattattcacttgctttgcattgaaccc
atgccacacagtgccattgccnaaaatttgcctgagaatgaaaataatgaaactggctta
gagaatgtcataaacaaagtggccacatttaagaaaccaggtgtgtcaggccatggagtt
tatgaactgaaagatgaatcattaaaagatttcaacatgtacttttatcattactccaaa
acacagcatagcaaggctgaacatatgcagaagaaaaggagaaaacaagaaaataaagat
gaagcactgccaccaccaccacctcctgagttctgtcctgctttcagcaaagttgtgaac
ctcctcaactgtgatatcatgatgtacatcctgaggaccatatttgagcgggcagtagat
acagattctaacttgtggactgaagggatgctccaaatggcatttcatattctggcactg
ggtttactagaagagaagcagcagcttcaaaaangccctgaagaagaagtgacatttgac
ttttaccataaggcttcaagattgggaagttcagccatgaatgctcagaatatacaaatg
cttttagaaaaactcaaaggaattccccagttagaaggccagaaggatatgataacatgg
atactccagatgtttgacacagtgaagcgattaagagaaaaatcttgtttaattatagcg
actacttcaggattggaatctattaagaatgatgagattactcatgataaagagaaagca
gaacgaaaaagaaaagctgaagctgctagactacatcgacagaagatcatggctcagatg
tctgccttacagaaaaacttcattgaaactcacaaacttatgtatgataatacatcagaa
atgcctggaaaagaagactccattatggaggaagaaagtaccccagcagtcagtgactac
tctagaattgctttgggtcctaaacggggtccaactgttactgaaaaggaggtgctgaca
tgcatcctctgccaagaagaacaagaggtgaaaatagaaaataatgccatggtattatcg
gcctgtgtccagaaatctactgccttaacccagcacaggggaaaacccatagaactccca
ggggaaaccctggacccacttttcatggatccagacttggcctatggaacttatacagga
agctgtggccatgtaatgcatgcagtgtgctggcagaagtattttgaagctgtacagctg
agctctcagcaacgcattcatgttgacctttttgacttggagagtggagaatatctttgc
cctctttgcaaatctctgtgcaatactgtgattcccattattcctttacaacctcagaaa
ataaacagtgagaatgcagaagctcttgctcaacttttgaccttgacaaggtggatacag
accattctggccagaatatcaggttacaatatgaaacattctaaaggagaaaatccagca
attcctgtcttgtttaatcaagggatgggagattccacttttgagtttcattcaatcctg
agttttggagttcagtcttcgatcaagtattctaatagtatcaaggaaatggtcattctc
tttgccacaactatttatagaattggtctaaaagtgcctcctgatgaaacagatcctcga
gtccccatgatgacctggagcacatgtgctttcactgtacaggcaattgaaaacctattg
ggtgatgaaggaaaacctctgtttggagcacttcaaaataggcagcataatggtctgaaa
gcattaatgcagtttgcaattgcacagaggattacctgccctcaggtcctgatacagaag
catctgatccgtctcctgtcagttgttctccctaatctaaaatcagaagatacaccatgc
cttctgtctatagatctgtttcatgttttggtaggtgctgtgttagcattcccatcctta
tactgggatgacactgttgatctacagccttcatcaattagttcttcctataaccacctt
tatctcttccatttgatcaccatggcacatatgcttcagatacttcttacgatagacaca
ggcctccctcttgctcaggttgaagaagacagtgaagaagctcgttctgcatcttctttc
tttgcagaagtttcacagtatacaagtggatgcattgggtgtgatattcctggctggtat
ctgtgggtctcattgaagaatggaatcaccccttaccttcgttgtgctgcattgtttttc
cactatttactaggggtaactccacctgaagaactacttaccaattctgcagaaggagaa
tatactgcattatgtagctatctatctttacccacaaatttgttcctgcttttccaggaa
tattgggatactgtaaggcccttactccagaggtggtgtgcagattctgtcttactgagc
tatttgaagcagaaaagcactgtggtcaggtaccctagaaaaagaaatagtttgatagag
cttcctgatgactacagctgcctactaaatcaagcttctcatttcaggtgtccacgatct
gcagatgatgaacgaaagcaccctgtcctctgtcttttctgtggggccatactatgttct
cagaacatttgttgccaagaaattgtgaatggggaagaggttggagcttgcatttttcat
gcacttcactgtggagcaggagtctgcattttcttaaaaatcagagaatgcagagtggtc
ctggttgaaggaaaagccagagggtgtgcctatccagccccttacttggatgaatatgga
gaaacagaccctggactgaagagaggcaaccctcttcatttatctcgtgaacggtatagg
aagctccatttggtctggcaacaacactgcattatagaagagattgctagaagccaggaa
actaatcagatgttatttggattcaactggcaattactgtga
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integrated database retrieval system
