Sciurus carolinensis (gray squirrel): 124976053
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Entry
124976053 CDS
T08117
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03013
Nucleocytoplasmic transport
ncar03015
mRNA surveillance pathway
ncar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124976053
09122 Translation
03013 Nucleocytoplasmic transport
124976053
03015 mRNA surveillance pathway
124976053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124976053
03041 Spliceosome [BR:
ncar03041
]
124976053
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124976053
Spliceosome [BR:
ncar03041
]
Complex C
Other components
EJC/TREX
124976053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
RRM_1
Motif
Other DBs
NCBI-GeneID:
124976053
NCBI-ProteinID:
XP_047394624
LinkDB
All DBs
Position
2:complement(125766636..125804151)
Genome browser
AA seq
1274 aa
AA seq
DB search
MAELEEVTLDGKPLQALRVTDLKAALEQRGLAKSGQKSALVKRLKGALMLENLQKHSTPH
AAFQPNSQIGEEMSQNSFIKQYLEKQQELLRQRLEREAREAAELEEASAESEDEMIHPGG
VASLLPPDFQSSLERPELELSRHSPRKSSSVSEEKGESDDEKPRKGERRSSRVRQARAAK
SSECSQAAEEEENQETPSRNLRVRADRNLKTEEEEEEEEDEEDEEEEEEEEEGQKSREAP
VLKQFQDEEGDVMPRAKPEEVTDERPKTLRAQEQEGLERGGRVTRSQEEARSRHLTRQQQ
EKEMQSVSPLEEKGEEIKFSQGLEEKSQSPSPPLLTEDLEKAPLVLPPEQTASEEETPPP
LLTKEASSPPPHTQLQSEEEIEPMEGPAPPVLIQLSPNTNAETRELLISRHTVQLTGGLS
PLSSSADTKAESPTEKVPEERVLPLVQKSTLAEYSTQKGLETEPEKSAQPVPLKMEELTS
PKGITEESLKQPSLEQKEGRRASHTLFPSHRLKQSADSSSSRSSSSSSSSSRSRSRSPDS
SGSQSLSPPRSKQRDVSQARVHANPHGRLKTGSRSTSESRSRSRSRSRSRSHSASSSSRK
SLSPGASRDSNTSYIETKDPSSGQEIAAPPVPQLQVLEPKERTSTSSSIQVRHLSQPEPA
EKIMTQRLQPERVSPKKCEAEEAEPPAATQPQAPETQTSYLPESERIHPTVEEKEEVTMD
TSENRPENEVPEPPMPIADQISNDDRPEGSAEDEEKKESSLPKSFKRKISVVSATKGVPA
GNSDTEGGQPGRKRRWGASTATTQKKPSISITTESLKEAVVDLHADDSRISEDETERNGD
DGTHDKGLKICRTVTQVVPAEGQENGQREEEEEEKEPEAEPPVPPQVSVEVALPPPVEHE
VKKVTLGDTLTRRSISQQKSGVSITIDDPVRTAQVPSPPRGKISNIVHISNLVRPFTLGQ
LKELLGRTGTLVEEAFWIDKIKSHCFVTYSTVEEAVATRTALHGVKWPQSNPKFLCADYA
EQDELDYHRGLLVDRPSETKTEEQGVPRPLHPPPPPPVQPPQHPRAEQREQERAVREQWA
EREREMERRERTRSEREWDRDKVREGPRSRSRSRDRRRKERAKSKEKKSEKKEKAQEEPP
AKLLDDLFRKTKAAPCIYWLPLTDSQIVQKEAERAERAKEREKRRKEQEEEEQKEREKEA
ERERNRQLEREKRREHSRERDRERERDRERDRGDRERDRERDRERGRERDRRDTKRHSRS
RSRSTPVRDRGGRR
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggcggagctggaggaggtgactctggacgggaagcctcttcaggcgctgcgggtgacc
gacctgaaggccgcactagagcaacgaggcctagccaagagcgggcagaagagtgccctg
gttaagcggctcaaaggggctctaatgctagaaaatttacagaaacattcaacaccccat
gctgcattccagccaaattcccagattggcgaggaaatgagccagaacagtttcataaag
cagtatctggaaaagcagcaggagctacttaggcagcgtctggaacgtgaagctcgagaa
gctgcagaacttgaagaagcttcagctgagtcggaggacgagatgatccatcctggggga
gtggcttccctgctgcctcctgactttcagagcagcctggagagaccagagctggagctc
agcagacattcgcccagaaaaagctcctctgtttctgaagagaaaggtgaatctgatgat
gagaaaccaaggaaaggagaaagacgatcatctagggtcagacaggcaagagcagctaaa
tcctctgagtgtagtcaggctgctgaggaggaagagaatcaagaaacaccttctagaaac
ctgagggtcagagcggatcgaaatttgaaaacagaagaggaagaagaggaggaggaggat
gaagaagatgaagaggaggaggaggaagaagaggagggacaaaaatctagggaggcacca
gttctgaaacagtttcaggatgaagagggggatgtgatgcccagagcaaaaccagaggag
gtgactgatgagagacccaaaactctaagagctcaggaacaggaggggctagagagagga
gggcgagttacacgatcccaggaagaagctagaagtcgtcatctcaccagacagcaacaa
gagaaagagatgcaatcagtttcccctcttgaggagaaaggtgaagaaataaaattttca
caaggcttggaggaaaaatcacagtctccttcccctcctctactgactgaagatctagag
aaggcccctcttgtgctaccaccagagcaaactgccagcgaggaggagacccccccacct
ttacttaccaaggaagcatcttctccaccacctcatacacaactccagagtgaggaagaa
atagagcccatggaaggcccagcaccccctgtcctcattcagttatctcctaatacaaat
gccgaaaccagagagcttttaatatctcggcatactgtgcagttgacaggtggcctgtct
cctttgtcaagttctgcagacaccaaagcagaatctccaacagagaaagtgccagaagag
agggttctgcctctagttcagaaaagcacactggctgaatattcaacccagaagggtctt
gaaactgaaccagaaaaatctgctcagccagtccctttaaaaatggaggaattaacatca
cccaaaggcatcactgaggaatctctaaaacaaccatctttggaacagaaggaaggcaga
agggcttcacatactcttttcccaagccacagattgaaacagtcagctgactcatcttct
agccgatcctcttcctcttcttcctccagttctagatctagatctcgttctcctgatagc
tctggctctcagtctctctcacctccgagatccaagcagagagatgtatcccaggcacga
gttcacgccaaccctcatggtagactcaagacaggctccaggtcaacatcagagtctagg
tcacgttcccgatctcgttcccgttctcgttcccattcagcatcaagcagcagcagaaaa
tctctgagccctggagcctccagggacagcaacaccagctacattgaaaccaaagacccc
tcttctggtcaggagattgcagctccaccagtgccacagctgcaggtccttgagccaaag
gagagaacttccacctcctcatccatccaagtgaggcatctgagccagcctgaaccagcc
gaaaagattatgacgcagaggttacagcctgagcgggtgagcccaaagaagtgtgaagct
gaagaggcagagccaccagctgccacacagcctcaagccccagagactcagacctcttat
ctgccagaatcagaaaggattcatcccactgttgaggagaaggaggaagtgaccatggac
acaagtgaaaacagacctgaaaatgaggttccagagcctccaatgcctattgcagaccaa
atcagcaatgatgaccgcccagagggcagtgctgaagatgaggagaagaaagagagttcg
ctgcccaaatcattcaagaggaagatctccgttgtctcagctaccaagggggtgccagct
ggaaacagtgacacagaggggggccagcctggtcggaagcgtcgttggggagccagcaca
gccaccacgcagaagaagccctccatcagtatcaccactgaatcactcaaggaggctgtt
gtggatcttcatgctgatgactcccgcatctctgaggatgagacggaacgtaatggtgat
gatgggacccatgacaaggggctgaaaatatgccggacagtcactcaggtagtacctgca
gaaggccaagagaatgggcagagagaagaagaggaagaagaaaaggagcctgaagcagaa
ccccctgtacctccccaagtgtcagtagaggtggccttgccaccacctgtggagcatgaa
gtaaagaaagtgactttaggagatactttaactcgacgttccattagccagcagaagtct
ggagtttccattacaattgatgacccagttcgaactgcccaggtgccctccccacctagg
ggcaagatcagtaacatcgtccatatatccaatttggttcgtcccttcactttaggccaa
ctgaaggaattattgggacgtacaggaaccttggtggaagaggccttctggattgacaag
atcaaatctcattgctttgtaacgtactcaacagtagaggaagccgttgccacccgcaca
gctctgcatggggtcaaatggccccagtccaatcccaaatttctttgtgctgactatgct
gagcaagatgagctggactaccaccggggcctcttggtggaccgtccctctgaaactaag
actgaggaacagggggtacccaggcctcttcaccccccgcccccacccccagtccagcca
ccacagcaccctcgggcagagcagcgggagcaggagcgggcagtgagggagcagtgggca
gagcgggagcgagaaatggagcgacgagagcgcactcgatcagagcgtgagtgggatcgg
gataaagttcgagaaggtccccgttcccgatcacgatcccgtgatcgccgccgcaaggaa
cgtgcgaaatctaaagagaagaagagtgagaagaaagagaaagcccaggaggagccacct
gccaagctgctagatgatcttttccgtaagactaaggcagctccctgcatctattggctc
ccactgactgacagccagattgttcagaaggaggcagagcgggctgaacgggccaaggaa
cgggagaagcggcgaaaggaacaagaagaagaagaacagaaggaacgggagaaggaagct
gaacgggaacggaaccgacagctggagagggagaaacgtcgagagcatagccgcgagagg
gatagggagagagagagggacagggagcgggacaggggggaccgagagcgggatagagaa
agggaccgggaacgaggcagggagagggatcgcagagacaccaagcgccacagcagaagc
cgaagtaggagcacacctgttcgggacaggggtgggcgtcgctag
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integrated database retrieval system
