KEGG   Sciurus carolinensis (gray squirrel): 124976202
Entry
124976202         CDS       T08117                                 
Name
(RefSeq) mRNA export factor
  KO
K14298  mRNA export factor
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03013  Nucleocytoplasmic transport
ncar05014  Amyotrophic lateral sclerosis
ncar05164  Influenza A
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    124976202
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    124976202
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    124976202
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncar03019]
    124976202
   03036 Chromosome and associated proteins [BR:ncar03036]
    124976202
Messenger RNA biogenesis [BR:ncar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     124976202
Chromosome and associated proteins [BR:ncar03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    124976202
SSDB
Motif
Pfam: Beta-prop_EML_2 WD40 WDR55 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_C Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_HPS5 WDR90_beta-prop_4th Beta-prop_Nup120_160 Beta-prop_SPT8
Other DBs
NCBI-GeneID: 124976202
NCBI-ProteinID: XP_047395047
LinkDB
Position
2:complement(5284231..5301939)
AA seq 425 aa
MRRVSAVIGAVATTSSRRLGLPAFLLALPRPVPPRQSLSAGSSGPLAARRGATLRAKMSL
FGTTSGFGTGGTSMFGSTTTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWA
NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQI
AQHDAPVKTIHWIKAPNYSCVMTGSWDRTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA
VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH
YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD
ARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELK
PRNKK
NT seq 1278 nt   +upstreamnt  +downstreamnt
atgcgccgtgtttccgcggtaattggggctgttgctaccaccagctcgaggaggctcggg
ctcccggcgttcctgctcgcgctacctcgcccggttcctccgcgccagagcctgtctgca
ggctcctcgggccctctcgctgcccgccgcggcgcgaccctcagagccaaaatgagtctg
tttggaacaacttcaggttttggaactggtgggaccagcatgtttggcagcacaaccaca
gataatcacaaccctatgaaggatattgaagtgacatcttctcctgatgatagcatcggg
tgtctgtctttcagccctccgaccttacctgggaacttccttattgcaggatcgtgggct
aatgacgttcgctgctgggaagttcaggacagtgggcagaccattccaaaagcccagcag
atgcatactggacccgtgttggacgtctgctggagtgatgatgggagcaaagtatttaca
gcatcctgtgataaaactgccaaaatgtgggaccttaatagtaaccaggcaatacagatt
gcacagcatgacgcacctgttaaaaccatacattggatcaaggctccgaactacagctgt
gtgatgacggggagctgggataggactctgaagttttgggatacccggtcgtcaaacccc
atgatggtcttgcagctccctgagaggtgttactgtgctgatgtgatctacccaatggcc
gtggtggcgactgcagagaggggcctgatcgtctaccagctagagaaccagccctctgaa
ttcaggaggatagagtctcccctgaagcaccagcatcgttgtgtggctatatttaaagac
aaacagaacaagccaactggctttgctctggggagtatcgaggggagagttgctattcac
tacatcaaccctccaaatcctgccaaagataacttcacctttaaatgtcatcgatccaat
ggaaccaatacttcagctccacaagacatctatgcggtaaatggaatcgcattccaccct
gttcacggtacccttgcaactgtggggtctgatggtaggttcagcttctgggacaaagac
gccagaacaaagctaaagacttcagagcagttagatcagccgatatcagcttgctgtttc
aatcacaatggaaacatatttgcctacgcttccagctacgactggtccaagggacatgag
ttttataatccccaaaagaaaaattacattttcctgcgtaatgcagccgaagagctaaag
cccaggaataagaagtag

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