Sciurus carolinensis (gray squirrel): 124976729
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Entry
124976729 CDS
T08117
Name
(RefSeq) thrombospondin type-1 domain-containing protein 4 isoform X1
KO
K23377
thrombospondin type-1 domain-containing protein 4
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
124976729
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ncar04990
]
124976729
Domain-containing proteins not elsewhere classified [BR:
ncar04990
]
Thrombospondin domain-containing proteins
ADAMTS-like proteins
124976729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP1_ADAMTS
ADAMTS_spacer1
TSP_1
ADAMTS_CR_3
TSP1_CCN
TSP1_spondin
PLAC
Motif
Other DBs
NCBI-GeneID:
124976729
NCBI-ProteinID:
XP_047395551
LinkDB
All DBs
Position
2:complement(84039554..84630280)
Genome browser
AA seq
1018 aa
AA seq
DB search
MVSHFKGSFGALGSLLLLGLQLVCPQHSTEHRKVPQRVATAEGALEDSGSAPGIWGAWGP
WSACSRSCSGGVMEQTRPCLPSSYRARGGPRPGAAARAYAGHVVSAVRTSVPLHRSREEL
RVPAVPDAGRQVSAVLRGSRHPQTRGRQPIAERRNRNRGPIGPGKYGYGKAPYILPLQTD
TTHTTPQRLRRQRPSPRHSRSQGTSAPRHGYSPPAYQLPHHAPLYQSDSGPRSGLQTSED
SIYQLPLTHDQGFPAASSLFHSPETSNNHGMGAQGASQSFSQPLRSTAISCIGAYRQYKL
CNTDVCPESSRSIREVQCASYNNKPFMGRFYEWEPFAEVKGNRKCELNCQAMGYRFYVRQ
AEKVIDGTPCDQNGTAICVSGQCKSIGCDDYLGSDKVVDKCGVCGGDNTGCQVVSGVFKH
ALTSLGYHRVVEIPQGATKINITEMHKSNNYLALRSRSGRSIINGNWAIDRPGKYEGGGT
MFTYKRPNEISSTAGESFLAEGPTNEILDVYMIHQQPNPGVHYEYVIMGTNAISPQVPPH
RRPGEPFNGQLEAEGRSQEDGEEKERDGEKEDLHGEAPEIFTSESVQTFPVRHTERFSSH
RPDNLVPPAPQPPRRSRDHNWKQLGMTECSTTCGKGSQYPVFRCVHRNTHEEVPESFCDS
SMKPTPEEEPCNLFPCPAFWDIGEWSECSKTCGLGMQHRQVLCRQVYANRSLTVQPYRCQ
HLEKPETTSTCQLKICSEWQIRTDWTSCSVPCGVGQRTRDVKCVSNIGDVVDDEECNMKL
RPNDIENCDMGPCAKSWFLTEWSERCSAECGAGVRTRSVVCMTNHVSSLPLEGCGNNRPA
EATPCDNGPCTGKVEWFAGSWSQCSIGCGSGTQQREVICVRKNADTFEVLDPYECSFLER
PPSQQSCHLQPCGAKWFSTEWSMCSKSCQGGFRVREVRCLSDDMTLSNLCDPQLKPEERE
SCNPQDCVPEVDENCKDKYYNCNVVVQARLCVYNYYKTACCASCTRVANRHAGVLGSR
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atggtttcccatttcaagggctcatttggtgccctgggttcccttctgctgcttggactc
cagctcgtctgcccacagcactccactgaacacaggaaggtcccacagcgggtagcgaca
gctgagggagccctggaggacagcggaagcgccccaggcatatggggcgcctggggtccc
tggtctgcttgctctcgcagctgcagcggtggcgtgatggagcagacgcggccctgcctg
cccagctcgtaccgcgcgcgaggcggcccacggcctggtgcagcagcgcgcgcctacgca
ggccacgtcgtatcagcagtgcgcacgtccgtgccactgcaccggagccgggaggagttg
cgtgtcccggctgtgccggacgctggccgccaggtatcagcggtgctgcgcggcagtagg
cacccgcagacccggggccgccaacccatcgcggaaagaaggaacaggaaccgaggtccc
attggtcctggaaagtatggctatggtaaggccccgtacatcttaccactgcagaccgac
actacacacacgacgccacagaggcttcggagacagaggccttcacctcggcattccagg
tcccaggggacatctgctcctaggcatggctacagcccaccagcctaccaactcccccac
catgcacctctgtaccaaagtgacagtggtcctcgctctggactgcagacctcagaagac
tccatataccagctgcctttgacccatgaccaaggcttccctgcagcttcaagtctcttc
cacagcccagaaacaagcaacaaccatggaatgggggcccagggagcctctcagagcttc
tcccagcctctgcgatctacagcaatctcctgcatcggggcctatcggcagtacaagctc
tgcaataccgacgtatgtccagaaagtagtagaagtatccgggaggtacagtgtgcatcc
tacaacaacaagccattcatgggccggttttatgaatgggaaccatttgcagaagtgaag
ggcaatcgcaagtgtgagctgaactgccaggcaatgggctaccgcttctatgtgcggcaa
gcagagaaggtcattgatggaaccccatgtgaccagaatggtacagccatctgcgtgtcc
ggacagtgcaagagcattggctgtgacgactacctaggctccgataaagtcgtggacaaa
tgcggggtatgcggaggcgataatacaggctgtcaggttgtgtctggggtgtttaagcat
gccctcaccagcctgggctaccatcgcgttgtggagattccccaaggagccacaaaaatc
aacatcaccgagatgcacaagagcaacaactatttagccttacgaagtcgttctggccgc
tccattatcaatgggaactgggcgattgaccgtcccgggaaatatgagggcggagggacc
atgttcacctacaagcgtccaaatgagatttcgagcactgctggagagtcctttttggcc
gaaggtcccactaacgagatcttggatgtctatatgatacaccagcagcccaacccagga
gtccactacgagtatgttatcatgggaaccaatgctatcagccctcaggtgccgcctcac
aggagaccaggggaacccttcaatggccagctggaagcagaaggtagaagccaggaagat
ggagaagagaaagagagggacggagagaaggaagatttgcatggtgaagcacctgaaata
ttcacctcagaatccgtgcagaccttcccagtcaggcatacagagagattttcttcccat
cgaccagacaacttggtgccaccagcaccacagcccccgaggcgaagccgggatcacaac
tggaagcagctggggatgacagaatgctcgacaacctgtgggaaaggatcgcagtaccct
gttttccgctgtgtgcacagaaatactcacgaagaggttccagagagcttctgtgactcc
agcatgaagccaacccccgaggaggagccctgcaacctcttcccttgcccagccttctgg
gacatcggggagtggtctgaatgcagcaaaacctgtggcctgggcatgcagcaccgccag
gttctgtgccgccaggtgtatgccaaccgcagcctgacggtacagccctaccgctgccag
cacctggagaagcctgagaccaccagcacctgccagctcaagatctgcagcgagtggcag
atccggactgactggacctcgtgctcagtgccctgtggagtgggacagaggacccgcgac
gtgaagtgtgtgagcaacatcggggacgtggtcgatgatgaggaatgcaacatgaagctc
cggccaaatgacatcgagaactgcgacatgggaccctgcgccaagagctggttcctcacc
gagtggagcgaaaggtgctcagctgagtgtggggctggagtgcggactcgctcagtggtg
tgcatgaccaatcacgtcagcagcctgcccttggagggctgcgggaacaaccggccagca
gaagccaccccatgtgacaatgggccctgtactggcaaggtggaatggttcgctgggagc
tggagtcagtgttccatcgggtgtgggagtggcactcagcagagggaggtgatttgtgtg
aggaagaacgcagacacctttgaagtgctggacccctacgaatgttccttcctggaaaga
ccccccagtcaacagtcttgccacctccaaccttgtggagctaaatggtttagcacagaa
tggagcatgtgctccaagagctgccagggtggcttcagggtccgggaagtgaggtgtctg
tctgatgatatgaccctaagtaatctctgtgaccctcagttgaaaccagaagagagagaa
tcttgtaacccccaggactgtgtccctgaagttgacgaaaactgcaaagacaagtactac
aactgcaacgtggtggtccaggcgcgcctctgtgtctacaactactacaagaccgcctgc
tgtgcctcttgcacccgtgtggccaatagacatgcgggagtcctggggagtagataa
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