Sciurus carolinensis (gray squirrel): 124976818
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Entry
124976818 CDS
T08117
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease isoform X1
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
124976818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124976818
Enzymes [BR:
ncar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
124976818
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
124976818
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
124976818
NCBI-ProteinID:
XP_047395741
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All DBs
Position
2:122546865..122549723
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AA seq
374 aa
AA seq
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MRGPRGHISHPRGRKACTVLCVRVRRCHARTEAGNTVKVLLRWATWYGCRRAFVTGMPKR
GKKGAAAEDGEEPKNEPEAKKSKVGAKKNEKEVAGEGPVLYEDPPDKKTSPSGKSATLKI
CSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSD
KEGYSGVGLLSRQCPIKVSYGIGEEEHDQEGRVIVAEFDTFVLVTAYVPNAGRGLVRLEY
RQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELL
QAVPLTDSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKA
LGSDHCPITLYLAL
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgcgtggaccacgtggtcacatcagtcacccacgtgggcgcaaagcgtgcaccgttctt
tgtgttcgggtaaggaggtgccacgctcggaccgaagcaggcaacacggtaaaagtactg
cttcggtgggctacgtggtacgggtgccgaagggcgttcgttacagggatgccaaagcgt
ggaaaaaagggagcggcggcagaagatggggaagagcccaagaatgagccagaggctaag
aagagtaaggtgggagcaaagaaaaacgaaaaagaggtagcaggagagggtccagtcctg
tatgaagaccctccagataagaaaacctcacccagtggcaaatctgccactctcaagatc
tgctcttggaatgtggatggacttcgagcctggattaagaagaaaggtttagattgggta
aaggaagaagccccagatatcctgtgcctccaagagaccaaatgttcagagaataaacta
ccagctgaacttcaagagctacctggactatcccatcagtactggtcagctccttcggac
aaggaagggtacagtggtgtgggtctactttcccgccagtgccccatcaaagtctcttat
ggcatcggtgaggaggaacatgatcaggaaggccgggtaattgtggctgaatttgacaca
tttgtgctagtaacagcctatgtacctaatgctggccggggtctggtaagactggagtac
cgccagcgctgggatgaagcctttcgcaagttcctgaagggcttggcttcccgcaagccc
cttgtgctatgtggggacctcaatgtggctcatgaagaaattgaccttcgtaaccccaaa
ggaaacaaaaaaaatgctggcttcactccacaggagcgccaaggctttggggaattgctg
caggctgtgccgttgactgacagtttccggcacttgtaccccaacactgcatatgcctat
accttttggacttacatgatgaatgctcggtccaagaatgttggctggcgccttgattac
tttttgttgtcccactctcttttacctgcattgtgtgacagcaagatccgctccaaagcc
cttggtagtgatcactgtccaatcaccctatacctagcactgtga
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