Sciurus carolinensis (gray squirrel): 124976935
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Entry
124976935 CDS
T08117
Name
(RefSeq) CDK-activating kinase assembly factor MAT1
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03022
Basal transcription factors
ncar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124976935
09124 Replication and repair
03420 Nucleotide excision repair
124976935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124976935
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124976935
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124976935
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124976935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_5
zf-C3HC4
zf-RING_UBOX
zf-UDP
zf-RING_2
zf-C3HC4_2
TRAF3_RING
DZR_2
DNA_ligase_ZBD
Zn_ribbon_6
zf-P11
zf-RING_4
DUF1272
Poty_PP
LMBR1
Motif
Other DBs
NCBI-GeneID:
124976935
NCBI-ProteinID:
XP_047395973
LinkDB
All DBs
Position
2:160379382..160613403
Genome browser
AA seq
309 aa
AA seq
DB search
MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV
QLFEDPTVDKEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLDNTKK
KMELYQKENKDIIQKNKLKLTREQEELEEALEVERQENEQRRLFIQKEEQLQQILKRKNK
QAFLDELESSDLPVALLLAQHKDRSTQLEMQLEKPKPIKPVTFSTGIKMGQHISLAPVHK
LEEALYEYQPLQIETCGPKVPELEMLGRLGYLSHVRAASPQDLAGGYTSSLACHRALQDA
FSGLFWHPS
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggatgatcagggctgccctcggtgtaaaaccaccaaataccggaacccctccctgaag
ctgatggtgaacgtgtgcggacacactctctgtgaaagttgtgtggatttactgtttgtg
agaggagctggaaactgtcctgagtgtggcactccacttcggaagagcaacttcagggta
cagctctttgaagatcccactgttgacaaggaggttgagatccggaaaaaagtgctaaag
atatacaataaaagggaagaagattttcctagtctaagagaatataatgatttcctagaa
gaagtggaggaaattgttttcaacttgaccaataatgtggatttggacaacaccaaaaag
aaaatggagctataccagaaggagaacaaagatatcattcagaaaaataagttaaagctg
actcgggaacaggaagaactggaggaagctttagaggtagaacggcaggaaaatgaacaa
agaagactatttatacaaaaagaagaacaactgcagcagattctaaaaaggaaaaataag
caggcttttttagatgaactggagagttctgatctccctgtagcactgcttttggctcag
cataaagatagatccacccaattggaaatgcagcttgagaaaccaaaacctataaaacca
gtgacattttctacaggcatcaaaatgggtcaacatatttcattggcacctgttcacaag
cttgaagaagctctctatgaataccaaccgctgcaaatagagacatgtggaccaaaagtt
cccgagcttgagatgctgggaagacttgggtatttaagccatgtcagagctgcttctcca
caggaccttgctggaggctatacttcttctcttgcttgtcacagagcactacaggatgca
ttcagtggacttttctggcaccccagttaa
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