Sciurus carolinensis (gray squirrel): 124976957
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Entry
124976957 CDS
T08117
Name
(RefSeq) E3 ubiquitin-protein ligase NEDD4 isoform X1
KO
K10591
E3 ubiquitin-protein ligase NEDD4 [EC:
2.3.2.26
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04120
Ubiquitin mediated proteolysis
ncar04144
Endocytosis
ncar04530
Tight junction
ncar05169
Epstein-Barr virus infection
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124976957
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
124976957
09144 Cellular community - eukaryotes
04530 Tight junction
124976957
09160 Human Diseases
09172 Infectious disease: viral
05169 Epstein-Barr virus infection
124976957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124976957
04121 Ubiquitin system [BR:
ncar04121
]
124976957
03029 Mitochondrial biogenesis [BR:
ncar03029
]
124976957
Enzymes [BR:
ncar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
124976957
Membrane trafficking [BR:
ncar04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
124976957
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
HECT type E3
124976957
Mitochondrial biogenesis [BR:
ncar03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Morphogenesis factors
124976957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
Motif
Other DBs
NCBI-GeneID:
124976957
NCBI-ProteinID:
XP_047396017
LinkDB
All DBs
Position
2:98067452..98192299
Genome browser
AA seq
1320 aa
AA seq
DB search
MAQSLRLHFAARRSNTYPLSETSGDDLDSHVHMCFKKPTRISTSNVVQMKLTPRQTALAP
LIKENVKLQERASVPSSENVNKKSSCLQISLQPTRYGGCLQPSNVLADGDDASFTCVLKD
GIYSSAVVDNELNAVNDGNLLSSSAICSDSLSNFSTSDNGSYSSNGSDYGSCASITSGGS
YTNSVISDSSGYTFPSSDDTFFGGNLPSDCTSNRSVPNRNTTPCEIFSRSPSAVPFVQDD
LEHGIEIMKLPVNRNAKIPLKRCSSLVIFPRSPSNTPPTSPTSAGILPSKGSYQTSHQFI
VSPNEISHNEDGTSGKGFLSTAVNGLRLSKTICTPGEVRDVRPLHARGSPQKKIVISNNS
PKQTVCEKSSEGYPCVSVHFTQQKATTLDCETTNGDCKPEMSEIILNSDSECTKLMPRMA
ACLPAIQNMDYQINIDGELERPNSQINKNHAVLQRSVSLGGTYPNISCLSSLKHNCSKGG
PSQLLIKFASGNEGKGNSLSRDSTRDFTNELSNSCKTRDDFLGQVDVPLYPLPTENPRME
RPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPKTSGSEEENAEQAEELEPGWVVLDQPDAA
SHLQQQQEPSPLPPGWEERQDVLGRTYYVNHESRRTQWKRPTPQDDLTDAENGNIHLQAQ
RAFTTRRQISEETESVDNRESSENWEIIREDEAATYSSQALPAPPLASNLDVQTYLAEGL
NARLTICGNSATSQTASCSNHSSRRGSLQAYIFEEQPTLPVLLPTSSGLPPGWEEKQDER
GRSYYVDHNSRTTTWTKPSAQATVEPSQLLSNQSPSAGPQSQLSLSDSAQQVTQPSEIEQ
GFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIPAHLRGKTSFDSSSDLGPLPPGWE
ERTHTDGRIFYINHNIKRTQWEDPRLQNVAITGPAVPYSRDYKRKYEFFRRKLKKQNDIP
NKFEMKLRRATVLEDSYRRIMGVKRADFLKARLWIEFDGEKGLDYGGVAREWFFLISKEM
FNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPF
YKMMLHKPITLHDMESVDSEYYNSLRWILENDPTELDLRFIIDEELFGQTHQHELKNGGS
EIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGL
GDVDVNDWKEHTKYKNGYNVNHQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAE
LYGSNGPQSFTVEQWGTPEKLPRAHTCFNRLDLPPYESFEELWDKLQMAIENAQGFDGVD
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaagcttacgattgcactttgcagccagaagaagcaatacttaccctttgtca
gaaacctccggagatgatttggatagccatgttcacatgtgcttcaaaaaaccaacacgg
atttcaacatctaatgttgttcaaatgaagctgacacccagacagactgcactagcaccg
ttaataaaggaaaacgtgaagcttcaggaaagagcatctgttccttcatctgaaaatgtt
aataaaaagagcagctgtcttcagatttcactacagccaacaaggtacggtgggtgtctc
cagcctagcaatgtcttagctgatggtgacgatgcttcatttacttgtgtcttgaaggat
ggcatttatagcagtgctgtggttgataatgaactgaatgctgtgaacgatggtaacctt
ttaagcagttctgctatttgtagtgatagccttagtaacttttcaaccagtgataatgga
tcttacagcagcaacggtagtgattatgggtcgtgtgcaagtatcacaagtggaggttca
tacaccaacagtgtcatcagtgacagtagtggttatacttttccatcgagtgatgataca
ttttttggtggaaatttaccttctgactgcacctccaatagaagtgtgccaaacaggaac
actactccttgtgaaattttttcaagaagtccaagtgcagttccctttgtccaggatgac
ttggagcatggaatagagattatgaaattgccagtgaacaggaatgcaaaaattccactg
aaacgttgctcatccttagtcatttttcctaggagtccttcaaatacgccaccaacttct
ccaacaagtgcaggtattcttccaagcaaaggatcctatcaaacctcacatcagtttatt
gtttctcctaatgaaatttcacataatgaagatggtactagtggtaaaggattcctgtcc
actgctgtcaatggactccgattatctaaaacaatttgtactcccggagaagtaagagac
gtacgaccacttcatgcaaggggctcaccacaaaagaaaattgttatttcaaataatagt
ccaaaacagactgtctgtgaaaagtcatctgaagggtacccttgtgtttcagtgcatttc
actcaacaaaaagcaaccacgttagactgtgaaacaacgaatggcgattgtaaaccagag
atgtcagaaattatacttaattctgattcagagtgtaccaagttgatgcccaggatggct
gcctgtttaccagccatccaaaacatggattatcaaataaatattgatggagagttggaa
agaccaaattcacagataaacaaaaaccatgctgttttacaaagaagtgtttcactggga
ggaacttacccaaatatttcctgtttatccagccttaagcacaattgttccaagggggga
ccatctcagttactcataaagtttgcatctggaaatgaaggtaaaggtaacagtttatca
agagacagcaccagagatttcacaaatgaactatcaaattcttgtaagacaagagatgat
ttcctaggtcaagtggatgttcctctttatccattaccgacagaaaatccaagaatggag
agaccatatacatttaaggacttcgttcttcacccaagaagtcataagtcaagagttaaa
ggttatctaagattaaaaatgacttatttacctaaaaccagtggctcagaagaagagaat
gcagaacaggctgaggaattagagcctggctgggttgttttggaccaaccagatgctgct
tcccatttgcagcagcaacaggaaccttctcctctacctccaggatgggaagagaggcag
gatgtccttggaaggacctactatgtaaaccatgaatctagaagaacacagtggaaaaga
ccaacccctcaggacgacctcacggatgctgagaatggtaacattcacctgcaagcacag
cgtgcctttaccaccaggaggcagatatccgaggaaacagaaagtgtggacaaccgggag
tcttccgagaattgggaaattataagagaagatgaagccgccacatatagcagtcaggcc
ctcccagcaccgccactagcgagcaacttggatgttcagacttaccttgcagaaggattg
aatgccagactcactatttgtggaaattcagccaccagccagacagcgtcctgctcgaat
cattccagcagaagaggcagcttacaagcctatatttttgaggaacagcctacacttcct
gtgctcttgcctacttcatctggattaccaccaggttgggaagaaaagcaggatgaaaga
ggacgatcatactacgtggatcacaattccagaacaaccacctggacgaagccctccgca
caggccacagtggagcccagtcagctgctatcaaaccagagtccttctgcaggcccccag
tcacagctctccttgagtgattcggcacagcaagtgacccagccatctgaaattgagcaa
ggattcctccctaaaggctgggaagtccggcacgcaccaaatgggaggcctttctttatt
gaccacaacaccaaaaccaccacctgggaagatccaagattgaaaattccagctcatctg
agaggaaagacatcatttgactcttccagtgatctagggcctttacctccaggatgggaa
gagagaactcacacagatggaagaatcttctacataaatcataatataaaaagaacacaa
tgggaagatcctcggctgcagaatgtagcaataactggaccagcagtgccctactccagg
gattacaaaagaaagtatgagttcttccgaagaaagttaaagaagcagaatgacattcca
aacaaatttgagatgaaacttcgccgtgcaactgttcttgaggactcttaccggagaatt
atgggtgtcaaaagagctgacttcctcaaggctcgactctggattgaatttgatggtgaa
aagggtttagattatggaggagttgccagagaatggttcttcctgatctcaaaggaaatg
tttaacccttattatgggttgtttgaatattctgctacggataattataccctacagata
aatccaaattccggattgtgtaatgaagatcacctctcttacttcaagttcattggtcgg
gtagctgggatggcagtttatcatggcaaactattggatggttttttcatccgcccgttt
tacaagatgatgctacacaaaccaataacacttcatgatatggaatcggtggacagtgaa
tattacaactccctaagatggattcttgaaaatgatccaacagaattggacctcaggttt
atcatagatgaagaactgtttggacagacacatcaacatgagttgaaaaatggtggatca
gaaattgttgtcaccaataagaacaaaaaggaatatatttatctcgtaattcaatggcga
ttcgtcaatcgaatccagaagcaaatggctgcttttaaagagggattttttgaactaata
ccacaggatctcatcaaaatttttgatgaaaatgaactggagcttcttatgtgtggattg
ggagatgtggatgtgaacgactggaaagaacatacaaaatataaaaatggctacaatgta
aatcatcaagtcatacagtggttttggaaggctgttttaatgatggattcagaaaaaaga
atacgattacttcagtttgtcactggcacatcccgtgtaccaatgaatggatttgctgaa
ctatatggctcaaatggaccacagtcatttacagttgaacagtggggtacccctgaaaag
ctgccaagagctcatacctgctttaatcgcttggacttgccaccctatgaatcatttgaa
gaattatgggataaacttcagatggcgattgaaaatgctcagggttttgatggagttgat
tag
DBGET
integrated database retrieval system
