Sciurus carolinensis (gray squirrel): 124977330
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Entry
124977330 CDS
T08117
Name
(RefSeq) unconventional myosin-Vc isoform X1
KO
K10357
myosin V
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
124977330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124977330
04131 Membrane trafficking [BR:
ncar04131
]
124977330
03029 Mitochondrial biogenesis [BR:
ncar03029
]
124977330
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ncar04812
]
124977330
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
124977330
mRNA cycle factors
P-body specific factors
124977330
Membrane trafficking [BR:
ncar04131
]
Others
Actin-binding proteins
Myosins
124977330
Mitochondrial biogenesis [BR:
ncar03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
124977330
Cytoskeleton proteins [BR:
ncar04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
124977330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
Csm1_N
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
124977330
NCBI-ProteinID:
XP_047396749
EnsemblRapid:
ENSSCRG00010018215
LinkDB
All DBs
Position
2:101515487..101607724
Genome browser
AA seq
1741 aa
AA seq
DB search
MAVAELYTQYNRVWIPDPEEVWKSAEIAKDYRVGDKVLQLLLEDGTELDYPIDPGSLPPL
RNPDILVGENDLTALSYLHEPAVLHNLRIRFAESKLIYTYSGIILVAMNPYKQLPIYGDA
IIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSGESGAGKTVSARYAMRYFAT
VSKSNSKAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDEKNQIIGANMRTY
LLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDQ
ADMVETRKTFTLLGLKEDFQMDVFKILAAILHLGNVQITAVGNERSLVSADDSHLKVFCE
LLGLERSKVAQWLCNRKIVTTSETVVKPMTRPQAINARDALAKKIYAHLFDFIVERINQA
LQFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKEDI
PWTLIDFYDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNPLFEKPR
MSNTSFIIQHFADKVEYKCEGFLEKNRDTVYDMLVETLRASKFRLCANFFQENPIPSSPF
GSMITVKSAKQVIKSNSKHFRTTVGSKFRSSLYLLMETLNATTPHYVRCIKPNDEKLPFE
FDSKRIVQQLRACGVLETIRISAQSYPSRWTYIEFYSRYGILMTQQELAFSDKKQVCKVV
LHRLIQDSNQYQFGKTKIFFRAGQVAYLEKLRLDKLRQGCVVIQKHVRGWLQRRKFLRER
QAALTIQQYFRGQQTVRKAITASALKEAWAAIIIQKHCRGYLVRNLYQLIRVATITIQAY
TRGFLARRRYRKMLEEHKAVILQKYARAWLARRRFQNIRRFVLNIQLTYRVQRLQKKLED
QNKENHGLVEKLTSLAALRAGDTEKIQKLEIELERAATHRQNYEEKGRRYKDTVEEKLAK
LQKHNSELEIQKEQIQLKLQEKTEELKEKMDNLTKQLFDDVQKEERQRILLEKSFELKTQ
DYEKQIQSLKEDIKALKDEKSQLHHRLEEERVTSDGLKGEVARLSKQAKTISEFEKEIEL
LQTQKIDVEKHVQSQKREMREKMSEITKQLLESYDIEDVRSRLSVEDLEHLNEDGELWFA
YEGLKKATRVLESHFQSQKDCYEKEIEALNFKVVHLSQEINHLQKLFREENDINESIRHE
VARLTSENMMIPDFKQQISELEKQKQDLEIRLNEQTEKMKGKLEVSNQLNRHLEEEGTQR
KVAEAQNEIHSKVKEKMMDKIQELQEASEHLKKQCETESEVGNDFRQEASRLTLENRDLE
EELDMKDRVIKKLQDQVKTLTKTIEKANDVHLSSGPKEYLGMLEYKQEDEAKLIQNLILD
LKPRGVVVNMIPGLPAHILFMCVRYADSLNDANMLKSLMNSTINGIKQVVKDHIEDFEML
SFWLSNTCHFLNCLKQYSGEEEFMKHNSPNQNKNCLNNFDLSEYRQILSDVAIRIYHQFI
IVMENNIQPIIVPGMLEYESLQGISGLKPTGFRKRSSSIDDTDAYTMTSILQQLSYFYTT
MCQNGLDPELVRQAVKQLFFLIGAVTLNSLFLRKDMCSCRKGMQIRCNISYLEEWLKDKN
LQNSLAKETLEPLSQAAWLLQVKKTTDSDAKEIYERCTSLSAVQIIKILNSYTPIDDFEK
RVTPSFVRKVQALLNSREDSSQLMLDTKYLFQVTFPFTASPHALEMIQIPSSFKLGFLNR
L
NT seq
5226 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggccgagctgtacactcagtacaacagggtttggattcctgatcctgaagaa
gtttggaagtctgctgaaatagcaaaggactacagagttggcgacaaggtcctgcaactc
ctgctggaagacggaacggagctggattatcccattgacccaggatctctgcctccgctc
aggaatcctgacatccttgtgggcgagaatgacctcacggccctgagctatctccatgag
cctgctgtgctccacaatctcagaatccgctttgcagagtccaaactcatttacacctac
agcgggatcattttggtggccatgaatccctacaagcagctgcccatatatggggatgcc
atcatccatgcctacagtgggcagaacatgggcgacatggacccacacatattcgccgtg
gcagaagaggcctacaagcagatggccagaaacaacagaaatcagtcgataattgtgagc
ggggagtcaggagctggaaagacagtgtcagctcgctatgccatgaggtacttcgccacg
gtcagcaagtccaacagcaaagctcacgtggaagacaaggtcctggcatccaaccccata
accgaggcagttggaaatgccaagaccacccgcaatgacaatagcagtcgttttgggaag
tacacagaaatcagctttgatgagaaaaatcagattataggcgccaacatgagaacctac
ctcctggagaaatccagagttgtctttcaatcagaaaatgaacgaaattaccacattttc
tatcagctttgtgcgtctgcacagcagtcggaatttaaacatctaaaactgggaagtgca
gaagaatttaattatacaagaatgggaggcaatactgtcattgagggtgtgaatgaccaa
gctgacatggtagagacccggaagaccttcacgctactgggtttgaaggaggattttcag
atggatgtttttaagatcctggcagccatcctgcatctgggcaacgtgcagatcacggca
gtgggcaacgagagatccttagttagcgcggatgacagtcacctgaaggtgttctgcgag
ctcctgggcctggagagaagcaaagttgctcagtggctatgcaatcgcaaaattgtcaca
acctctgagacagtggtgaaacccatgaccaggccccaggccatcaacgccagggatgcg
ctggccaaaaagatctatgctcacctgtttgatttcattgtggagagaattaaccaagca
ttgcagttttcaggcaagcagcacacttttattggtgttttggacatttatggttttgaa
acctttgatgtgaacagctttgaacaattctgcatcaattatgctaatgaaaaactgcag
caacagtttaacctgcatgtctttaaacttgaacaagaagaatatatgaaggaagatatc
ccttggactctgatagatttttatgacaaccagccagttattgacctgattgaagcaaag
atgggcattctggaactactggatgaagaatgtttgttaccacatggaactgatgaaaat
tggcttcaaaaactgtataataattttgtcaacaagaaccccttatttgaaaaacctaga
atgtcaaatacgtcctttatcatccagcactttgctgataaggtagagtataaatgtgaa
ggtttccttgagaagaacagagacactgtctatgacatgctggttgaaaccctgagagca
agcaagtttcgtctctgtgccaacttttttcaagaaaatcccattccttcttcccctttt
ggctcaatgatcacagttaaatctgcaaagcaagttatcaagtcgaacagcaagcacttc
cggaccacagttgggagcaagttccgcagctctctgtacttgctcatggagaccctcaat
gccacaacaccccactatgttcgatgcatcaagccaaatgatgagaaattgccctttgag
tttgactccaaaagaattgtccagcagctgcgagcctgcggcgttttggagacgatccgc
atcagtgcgcagagctatccttccaggtggacgtacattgagttctacagccgctatggc
atcctcatgacccagcaggagcttgccttcagtgataagaagcaggtgtgcaaggtggtt
ttgcacaggctcatccaggattctaatcagtaccagtttggtaaaaccaaaattttcttc
agagcaggacaagtggcttacctagagaaactccgattggataaactgaggcagggttgt
gttgtcatacaaaagcacgtccgtggctggcttcagaggagaaaattcctccgagagagg
caagctgccctaaccatccagcagtacttccggggccagcaaactgtgaggaaagctatc
accgcctcggccttgaaagaggcctgggcggccatcatcattcagaagcactgccgtggg
tacctcgtccgcaatctgtaccagctgatccgtgtggccaccatcaccatccaggcctac
acccgaggattcctggccaggaggaggtatcgaaagatgctggaggaacacaaggctgtg
atccttcagaaatatgcacgggcatggctggccaggcgcagattccagaatatccgacga
ttcgtgctcaacattcagctgacttacagggtccagcgtttgcagaaaaagctggaagat
cagaacaaagagaaccatgggctggtggagaagctgaccagcctcgctgctctacgggcc
ggtgacacagaaaagattcagaagctggaaatagagctggaaagagcggccacccacagg
cagaattacgaggagaagggcagaagatacaaggacaccgtggaagagaaattggcaaag
cttcagaagcataattcagaactggaaatacagaaagagcaaatacagttgaagcttcaa
gagaagaccgaagagttgaaagaaaaaatggacaacctcaccaagcagctgtttgatgat
gtacaaaaagaagaacgacaaagaatacttcttgaaaaaagttttgagttgaaaacacaa
gactatgagaagcagatacagtctctgaaagaagacattaaagctctcaaggatgagaaa
tcacagctccatcatcgactggaggaggagcgtgtcacctcggatggcctcaagggggaa
gtggctcggctgagcaagcaggctaagaccatctctgagtttgagaaggagatcgagctg
cttcagacgcagaagatagacgtggaaaaacatgtgcaatcacagaaacgagaaatgaga
gaaaagatgtcagagatcaccaaacaactcctcgagagttatgacattgaagatgtaaga
agcaggctttctgttgaagatttggaacatttaaatgaggatggagaactctggtttgct
tatgaaggactaaagaaagcaacacgtgttttggagagtcatttccagtctcagaaggat
tgctatgaaaaggaaattgaagctctgaacttcaaagtggtgcatctaagtcaagaaatc
aaccacctgcaaaaattgtttagagaagagaatgacatcaatgaaagtatccgtcatgaa
gttgcgaggctgacatcagaaaacatgatgatcccagactttaaacagcaaatttcagag
ctagagaaacagaagcaagatcttgaaattcgtctgaatgaacaaactgagaaaatgaaa
ggaaaactagaagtgtctaatcagttaaatcgccatctagaagaggaaggaacacaaaga
aaggtagcagaagcccagaatgaaatacactccaaagtgaaagagaagatgatggataag
atccaagaactgcaggaggccagcgagcacctgaagaagcaatgtgagactgaaagtgag
gttgggaacgattttcggcaggaagcttctcgtctcactttggaaaacagggaccttgaa
gaagagttagacatgaaggacagagtgattaaaaagctacaagatcaagtcaagactcta
accaagacgattgaaaaagccaatgatgtgcacttgtcctcgggacccaaggagtacctt
ggaatgctggaatacaagcaagaagacgaggccaagctcattcaaaacctcattcttgac
ctgaagccccgtggtgtggttgtgaacatgatccctggactgccggctcacatcctgttc
atgtgtgtacgctacgcagactctctaaatgatgccaacatgctgaagtcccttatgaac
agcaccattaatggcatcaagcaggtggttaaggatcatatagaagactttgagatgctg
tccttttggctttccaatacctgtcacttcctcaattgcctgaagcagtacagtggagaa
gaggaattcatgaagcataacagtccaaatcagaataagaattgcttgaacaattttgac
ctttcagaatatagacagattcttagtgatgtggccatacgaatatatcatcagttcatt
atcgtaatggaaaataacatccaaccaataatagtgcccggcatgctggagtatgagagt
ctgcagggcatctccggcctaaagcccaccggcttccggaagcggtcatccagcatagat
gacacggacgcttacacgatgacctccatcctgcagcagctgagctatttttacaccacc
atgtgccagaatggcctggacccggagctcgtgaggcaggcagtgaagcagctgttcttc
ttgattggggcagtcaccctgaatagccttttcctgcgcaaggacatgtgctcctgcagg
aaagggatgcagataaggtgcaacatcagctacttagaagaatggcttaaggataagaat
ttgcagaacagcctagccaaggaaactttggagcccctctctcaggcagcctggttgctc
caggtcaagaagaccacagacagcgatgccaaggagatctatgaacgctgcacctcactg
tcagctgtgcagataataaagatccttaattcatacacacctatagatgacttcgagaaa
agagtgactccatcctttgttcgcaaagtacaggcacttctgaatagccgggaggattca
tcacagctgatgttggataccaaatacctctttcaagtcacatttccttttactgcctct
ccacacgctctggaaatgattcagatccccagcagtttcaagctaggctttctcaataga
ttatag
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integrated database retrieval system
