Sciurus carolinensis (gray squirrel): 124977585
Help
Entry
124977585 CDS
T08117
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04140
Autophagy - animal
ncar04148
Efferocytosis
ncar05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124977585
04148 Efferocytosis
124977585
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
124977585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124977585
Membrane trafficking [BR:
ncar04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
124977585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Beta-prop_RIG_2nd
WD40_like
Lgl_C
SAM_CEP-1_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
124977585
NCBI-ProteinID:
XP_047397178
LinkDB
All DBs
Position
2:110324326..110368106
Genome browser
AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSIWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLIENFKGLAIPYLEHIIHVW
EETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEELGELGEYRQKLLMFLEIS
SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTKMAEEYCHKHYDQNK
DGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgctttcgagccagtaccgatcctagaaaagctacctttgcagatcgactgc
ctagctgcttgggaggaatggcttcttgttggaaccaagcaaggacatcttcttctctat
aggattcggaaggatgttggttgtaacaggtttgaagtgactctagagaaatccaataag
aatttctccaaaaagattcagcagatccatgttgtttcccagtttaagattctggtcagc
ctcttagaaaacaacatttatgtccatgacctattgacatttcaacaaatcactacagtt
tcaaaggcaaagggagcttcgctgttcacatgtgaccttcagcacacagagactggtgag
gaggtattacggatgtgtgtagcagtgaaaaagaagctgcagctttacttctggaaagac
agagaatttcatgaattgcagggggatttcagtgtaccagatgtgcccaagtccatggcg
tggtgtgagaattctatctgtgtgggtttcaagagagactactacctaataagggtggat
ggaaaggggtccatcaaagagctctttccaacaggaaaacagctggagcccttagttgca
ccgctggcagatggaaaagtggctgtgggtcaggatgatcttactgtggtcctcaatgaa
gagggaatctgcacccagaaatgtgccctgaactggacagacataccagtggccatggag
caccagcctccttacatcatcgcagtgttgcctcgctatgtggagatccgaacttttgaa
cctaggcttctggtccagagcattgaattacaaaggccccgtttcattacctcaggggga
tcaaacattatctatgtggccagcaatcattttgtttggagactcattcctgttcctatg
gcaactcaaatccaacagcttctccaagacaagcagtttgaattggctctgcagcttgca
gaaatgaaagatgattctgacagtgaaaagcagcaacaaatccatcacatcaagaacttg
tatgccttcaacctcttctgccagaaacgctttgatgagtccatgcaggtctttgctaaa
cttggcacagatcccactcacgtgatgggcctgtatcctgacttgctgcccacagactac
aggaagcaattgcagtatcctaacccattgcccgtgctgtctggtgccgaattggagaaa
gctcacttagctctgattgactacctgacacagaaacgaagtcagttggtaaagaagctg
aatgactctgatcaccagtctagcacctccccactcatggaaggaactcccaccatcaaa
tccaagaagaagctgctgcaaatcattgacaccaccctgctcaagtgctacctccataca
aacgtggccctggtagcccccttgctgcgcctggagaacaatcactgccacattgaggag
agtgaacatgtgctgaagaaggctcacaagtatagtgaactgataatcctgtatgagaag
aaggggctccatgagaaagctctgcaggtactggtggaccagtcaaagaaagcaaactcc
cctttaaaaggccatgagaggacagtgcagtatctgcagcacctgggcacagaaaacttg
catttgatattttcctactctatatgggtactgagagacttcccagaggatggcctgaag
atatttactgaagatctgccagaggtggaatctctgccacgagatcgagtgcttggcttc
ttaatagagaattttaagggtctggctattccttatctggaacacatcatacatgtttgg
gaggagacaggctctcgattccacaactgcctgatccaactgtactgtgagaaggtgcaa
ggtctgatgaaggagtacctcctgtccttccctgcaggcaaaaccccagtccctgctgga
gaggaactgggtgagctgggagaataccggcaaaagctgctcatgttcttggagatttcc
agctactatgatccaggccggctcatctgtgattttccttttgatggactcttagaagaa
cgagccctcttattggggcgcatggggaaacatgaacaagcactcttcatctatgtccac
gtcttgaaggatacaaagatggctgaggagtactgccacaaacactatgaccaaaacaaa
gatggcaacaaagatgtgtatctgtccctgcttcggatgtacctgtcaccccccagcatt
cactgcctagggccaatcaagctggagctgctggaaccacaagccaacctccaggctgcc
ctgcaggtccttgagctgcaccatagcaaactggataccaccaaggctatcaaccttctg
ccagcaaacactcagatcaatgacatacgcatctttctagaaaaggtcttggaagaaaat
gcacaaaagaaacggttcaatcaagtgctcaagaaccttctccatgctgaattcctgagg
gtccaggaagaacgaattttacaccagcaggtgaagtgcatcatcacagaggagaaagtg
tgcatggtatgtaagaagaagattgggaacagtgcatttgcaagataccccaatggagtg
gttgtgcactacttctgttccaaagaggtaaacccagccgacacctga
DBGET
integrated database retrieval system
