Sciurus carolinensis (gray squirrel): 124977644
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Entry
124977644 CDS
T08117
Name
(RefSeq) cytoplasmic FMR1-interacting protein 1 isoform X1
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04810
Regulation of actin cytoskeleton
ncar05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
124977644
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
124977644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124977644
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124977644
Factors involved in mRNA localization
Other mRNA localization factors
124977644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
Cypovirus_WIV_4
zf-CW
LRIF1
Motif
Other DBs
NCBI-GeneID:
124977644
NCBI-ProteinID:
XP_047397294
LinkDB
All DBs
Position
2:complement(76908766..77011396)
Genome browser
AA seq
1391 aa
AA seq
DB search
MAAQVTLEDALSNVDLLEELPLPDQQPCIEPPPSSLLYQPNFNTNFEDRNAFVTGIARYI
EQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVT
KLMNFMYFQRNAIERFCGEVRRLCHAERRKDFVSEAYLITLGKFINMFAVLDELKNMKCS
VKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFLANHNKITQSLQQQLEVISGYEELLAD
IVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLMDGSVSNIYKLDAKKRINLSKIDKYFK
QLQVVPLFGDMQIELARYIKTSAHYEENKSRWTCTSSSSSPQYNICEQMIQIREDHMRFI
SELARYSNSEVVTGSGRQEAQKTDAEYRKLFDLALQGLQLLSQWSAHVMEVYSWKLVHPT
DKYSNKDCPDNAEEYERATRYNYTSEEKFALVEVIAMIKGLQVLMGRMESVFNHAIRHTV
YAALQDFSQVTLREPLRQAIKKKKNVIQSVLQAIRKTVCDWETGHEPFNDPALRGEKDPK
SGFDIKVPRRAVGPSSTQLYLVRTMAESLSSAELQRQLKSLGMERLLHVVNAFLRQSYTY
PPLLTFGGKTSFVFLIDVCGTEVNCSAASGSFPQAAATWPLRWARGPYGRRAHSLGPGPS
PVRVAEQSFSRGFSEFCITNVPCIFSPLQMFPWITQLYMVRTMLESLIADKSGSKKTLRS
SLEGPTILDIEKFHRESFFYTHLINFSETLQQCCDLSQLWFREFFLELTMGRRIQFPIEM
SMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQF
VYKLADQIFAYYKVMAGSLLLDKRLRSECKNQGATIHLPPSNRYETLLKQRHVQLLGRSV
DLNRLITQRVSAGMYKSLELAIGRFESEDLTSIVELDGLLEINRMTHKLLSRYLTLDSFD
AMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQEFQRDKQPN
AQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQ
GTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCFQNLREVGN
AVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKYAPLHLVPL
IERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLPSNGVMHVD
ECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRFAVLDFCYH
LLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGESTPVEHVRCF
QPPIHQSLASS
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcaggtgacgctggaggatgcgctgtccaacgtggacctcctggaagagctg
cctctgcccgaccagcagccctgcattgagcccccaccgtcctcgctgctctaccagcca
aatttcaacaccaactttgaagacagaaatgcatttgtcactggcatcgcaagatacatt
gaacaagcaaccgtccactctagcatgaatgagatgctggaggaaggccaagagtatgct
gtcatgctgtatacctggaggagctgctcccgggccatcccacaggtgaaatgtaatgag
cagcctaatagagtggaaatatatgaaaaaactgtggaggtcctggagcctgaggtcacc
aaactgatgaattttatgtacttccagagaaatgctatcgagcgtttctgtggggaggtg
agacgcttatgccatgctgagaggaggaaggactttgtgtcagaagcctacctgatcacg
ctgggcaaattcatcaacatgttcgctgtgttggatgagctgaagaacatgaagtgcagt
gtgaagaacgaccactcggcatacaagagggctgctcagtttttacgtaaaatggcagat
ccacagtccatccaggaatcgcaaaatctttccatgttcctggccaatcacaacaagatc
acacaatctctgcagcagcagctcgaggtgatttctggctacgaagagctcctggcagac
atcgtgaatctgtgcgtggattactacgagaataggatgtacttgacgcccagcgagaaa
cacatgcttctcaaagtcatgggatttggtctgtacttgatggatgggagcgtcagtaac
atctataaactagatgccaagaaaagaataaacttatccaaaatcgacaagtacttcaag
cagctccaggtggttccgctgttcggggacatgcaaatagaactggcaagatacatcaag
accagcgcccactatgaggaaaataaatctcggtggacatgcacatcctcaagcagcagc
ccacagtacaacatctgtgagcagatgatccagattcgagaggaccacatgcgcttcatc
tcagagctggcgcgctatagcaacagtgaggtggtcactggttccggccgccaggaggcc
cagaagacagacgctgagtaccggaagctctttgacctggctctgcagggcctgcaactg
ctgtcgcagtggagcgcacacgtgatggaagtgtactcatggaaactcgtgcacccaact
gacaagtactccaacaaggactgccccgacaatgccgaggagtacgagcgagccacgcgc
tacaactacaccagcgaggagaagtttgccctggtggaggtgattgccatgatcaaaggc
ctacaggtgttgatgggcaggatggagagcgtgttcaaccatgccatccgccacactgtc
tatgctgcgctgcaggacttctcccaggtgaccctcagggagccgctgcggcaggccatc
aagaagaagaagaatgtcatccagagtgtcctgcaggccatcaggaagacagtgtgtgat
tgggagaccgggcatgagcccttcaacgacccagctctgcggggcgagaaggaccccaag
agtggcttcgacatcaaagtgccacgccgtgccgtaggaccctccagcacacagctctac
ctggtgcgcaccatggccgagtccttgagctctgccgagctgcagaggcagctcaagtct
ctgggcatggaaaggctcttgcatgtggtaaacgcgtttctgaggcagtcgtacacctat
ccacctcttttaacctttggtggtaagacatcgtttgtttttcttattgatgtgtgcggc
acggaggtgaactgctccgctgcaagtggttctttcccccaggcagcagcaacttggcca
ctcagatgggcccgcgggccctatggccgccgagcgcacagcttggggccggggcccagc
ccagtcagggtagcggagcagtccttctctcgtggtttttctgagttttgcataactaat
gtaccgtgtatattttctcccttacaaatgtttccttggataacacagctttacatggtg
agaaccatgctagagtccctcattgcagacaaaagtggttccaagaaaaccttgagaagt
agccttgaggggcccaccatattggacatagaaaaatttcatcgagagtcattcttctac
actcacttgataaatttcagtgaaacgctgcagcagtgctgtgacctctcccagctttgg
ttccgagagttcttcctggagctgaccatgggcaggaggatccagttccccattgaaatg
tccatgccctggatcctgactgaccacatcctagagaccaaggaggcatccatgatggag
tacgtcctctactccctggacctgtacaatgacagcgcccattacgcactcaccaggttc
aacaagcagttcctctatgatgaaatcgaggcagaggtgaacctttgttttgaccaattt
gtttacaagctggcagaccagatatttgcttattataaggttatggcaggaagtttgctt
ctcgataaacggttacgatcggaatgcaagaatcagggagccacaattcatctcccgcca
tctaaccgctacgagacactgctgaagcagaggcatgtacagctcctcggcagatcagtg
gatctcaatcgcctgattacacagcgtgtgtcagcaggcatgtataagtctctggagcta
gcaattggacgatttgaaagtgaagacttgacatcaatagttgagctggatggccttttg
gaaatcaatcgcatgacccataagctgctgagcaggtacctgacgctggacagctttgac
gccatgttccgggaagccaaccacaatgtgtcagcaccctatggaagaatcaccctccat
gtcttctgggagctcaactacgacttcctgcccaactactgctacaatggctccaccaac
cggtttgttcgaacagtgttaccattttctcaggaatttcaaagagataaacagcctaat
gcacaaccccaatatttgcatggatccaaggctttgaaccttgcctactccagcatttat
ggcagctaccggaactttgtgggacctccacactttcaagtcatctgccggctgctgggc
taccagggcattgcggtggtcatggaagagctgctgaaggttgtcaagagcctgctgcaa
ggcacaatcctgcagtacgtgaagacgctgatggaggtgatgcccaagatctgccgcctg
ccccggcatgagtacggctctccaggcatcctggagttcttccaccaccagctgaaggac
attgtggagtacgcagagctgaagacagtgtgtttccagaacctgcgggaggtggggaat
gctgtcctcttctgcttgctcatcgagcagagcctgtctttagaagaagtgtgtgacctg
ttgcacgcagctcctttccagaacatcttgccacgtgtccatgtgaaagagggggagaga
cttgatgccaaaatgaaaagattggaatccaagtatgccccactgcatcttgtcccactg
atcgaaaggttggggaccccacagcaaattgcaatcgcaagagagggcgacttgctgacc
aaggagcgtctctgctgcggcctgtctatgtttgaagttatcctgacacggattcggacc
tttctggatgaccccatctggcgcgggcctctgcccagcaatggggtcatgcatgtggat
gaatgcgtggagttccacaggctgtggagtgccatgcagtttgtctattgcattcctgtg
gggacacatgaatttacagtggagcagtgttttggtgatgggctccactgggccggctgc
atgatcatcgtgcttcttgggcagcagcggcgatttgctgtgctggatttctgctaccat
ctactcaaagtccagaaacatgatggcaaggatgagattatcaaaaacgtgcctttgaag
aagatggtggagagaattcggaagttccagattctcaatgatgagatcatcactatcctg
gacaagtacttgaagtcaggtgatggggagagcacacccgtggaacatgtgcgctgcttc
cagccgcccatccaccagtctctggccagcagctaa
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