Sciurus carolinensis (gray squirrel): 124977714
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Entry
124977714 CDS
T08117
Name
(RefSeq) probable ATP-dependent RNA helicase DHX35 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncar03041
]
124977714
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124977714
Spliceosome [BR:
ncar03041
]
Complex C
Other components
Complex C specific factors
124977714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
AAA_22
DEAD
ABC_tran
AAA_19
Cas3-like_C_2
AAA_7
nSTAND3
Motif
Other DBs
NCBI-GeneID:
124977714
NCBI-ProteinID:
XP_047397433
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Position
2:complement(19466112..19541538)
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AA seq
703 aa
AA seq
DB search
MAAPLGPVKFWRPGTEGPGVSISEERQSVTENSGTTIVYNPYAALSIEQQRQKLPVFKLR
NHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAAVAVAGRV
AEERGAVLGHEVGYCIRFDDCTDPLATRIKFLTDGMLVREMMVDPLLTKYSAIMLDEAHE
RTLYTDIAIGLLKKIQKKRGDLRLIVASATLDAEKFRDFFNQNETSDPTRDTCVILTVEG
RTFPVDIFYLQSPVPDYIKSTVETVVKIHQTEGDGDILAFLTGQEEVETVVSMLIEQARA
LARTGMKKHLRVLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDC
GFVKLRAYNPRTAIECLVVVPVSQASANQRAGRGGRSRSGKCYRLYTEEAFDKLPQSTVP
EMQRSNLAPVILQLKALGIDNVLRFHFMSPPPAQSMVQALELLYALGGLDKDCRLTEPLG
MRIAEFPLNPMFAKMLLESGNFGCSQEILSIAAMMQIQNVFVTPSNQKSQAIRVHRKFAV
EEGDHLTMLNVYEAFIKHNKNSQWCQEHFLNYKGLVRAATVREQLKKLLVKFQVPKKSSE
GDPDPVLRCIVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYAEKPPRWVIYNEVIQ
TSKYYMRDVTAIESSWLLELAPHFYQQGTHLSLKAKRAKVQDL
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcccttgggacccgtgaagttctggcgacccggtacagaggggccaggtgtc
agcatctctgaagagagacaaagtgtcactgaaaactctgggacaaccattgtttataac
ccgtacgccgccctttccatagagcagcagaggcagaagctgcccgtgttcaagcttagg
aatcatattttatacttgatagaaaactaccagacagtggtgattgttggagaaacagga
tgtgggaaaagcacacagattcctcagtacctggcagaagctggctggacggcggaagga
agggtggtcggcgttacccagcctcggagagtggctgctgttgcagttgcagggcgagta
gccgaggagaggggtgcagtgctgggccacgaggtgggctactgcatccgctttgatgac
tgcaccgacccgttggccacgagaattaagtttcttactgatggaatgctggtgagggaa
atgatggttgatccattattaacaaaatatagtgccatcatgctggacgaagctcacgag
aggaccttgtacaccgacattgccattggcttgctgaaaaagattcagaaaaagcgtgga
gatcttcggctgattgtggcttcagccactctggatgcagagaaatttcgggatttcttt
aatcaaaacgaaaccagtgatccaaccagggatacatgtgtgatccttacagtggaaggg
cgaacatttccggtggatatcttttatctacaaagtcctgttccagattatatcaaatca
actgtggaaactgtggtgaaaattcaccagaccgagggagatggagacatacttgccttt
cttactggccaggaagaggtggaaactgtcgtgtctatgctgattgagcaggcccgagcc
ctcgctcgcactggaatgaagaagcacctccgggtcctccccatgtacgcgggtctgcct
tcctttgagcaaatgaaagtgtttgaaagggtgtcacgcagcgtcaggaaggtgatagtg
gccactaatgtggcggagacctccattacgatcagtggcattgtatatgtgattgactgt
ggctttgtgaagctgcgggcctacaatcccaggacggctatcgaatgcttggtggtggtg
ccagtgtcccaagcgtcagccaaccaacgagcaggacgtggtgggcgcagccgctctggg
aagtgttaccgcctttatacagaggaagccttcgacaagttgcctcagtctaccgttcct
gagatgcagcgtagcaatttggcccctgtcatcctgcagctgaaagcgctagggattgac
aatgtcctcaggtttcatttcatgtccccccctccagcacagtcgatggttcaagctttg
gagttactctatgctctgggaggtctggacaaagactgtcgcctaactgaaccgcttggc
atgagaatagccgagtttcctttgaatcccatgtttgccaaaatgctgcttgaatcagga
aattttggctgttctcaggaaattctaagcattgcagccatgatgcagatccagaatgtc
tttgtgaccccctcaaaccagaagtctcaggcaattcgggtacaccgaaaatttgctgtg
gaagagggcgatcacctcaccatgctgaatgtgtatgaagcattcatcaaacacaataag
aactcccagtggtgtcaggagcatttcctgaattacaagggtctcgtcagagctgccacc
gtgagagaacagttgaaaaagcttcttgtcaagtttcaggtgcccaagaagtccagcgaa
ggtgatcctgatccggttctgcggtgcattgtttctggattctttgcaaatgcagcaagg
tttcattctactggagcttataggactatccgggatgatcacgagctgcacatccaccct
gcatccgtcctctatgcagagaagccgcctcgctgggtcatctacaatgaagttatccag
acctccaagtattacatgagagacgtgactgccatagaatcttcgtggctgttggagctg
gctccacacttttatcagcaaggaacgcacctgtccctgaaagccaaaagggccaaggtc
caggacttgtga
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