Sciurus carolinensis (gray squirrel): 124977803
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Entry
124977803 CDS
T08117
Name
(RefSeq) nuclear receptor ROR-alpha isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04659
Th17 cell differentiation
ncar04710
Circadian rhythm
ncar05017
Spinocerebellar ataxia
ncar05321
Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
124977803
09159 Environmental adaptation
04710 Circadian rhythm
124977803
09160 Human Diseases
09163 Immune disease
05321 Inflammatory bowel disease
124977803
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
124977803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124977803
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ncar03310
]
124977803
Transcription factors [BR:
ncar03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
124977803
Nuclear receptors [BR:
ncar03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
124977803
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
124977803
NCBI-ProteinID:
XP_047397608
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Position
2:93274815..93947470
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AA seq
523 aa
AA seq
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MESAPAAPDPAASEPGSSGADAAAGSRETPLNQESAHKSEPPAAVRRQSYSSTSRGISVT
KKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRT
SRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAE
PLTPTYNISANGLTELHEDLSTYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIK
PEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQITW
QTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGS
LEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI
ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRAL
CGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggagtcagctccggcagcccccgaccccgccgccagcgagccgggcagcagcggcgcg
gacgcggccgccggctccagggagaccccgctgaaccaggaatccgcccacaagagtgag
ccgcccgccgcggtgcgcagacagagctattccagcaccagcagaggtatctcagtaaca
aagaagacacatacatctcaaattgaaattattccatgcaagatctgtggagacaaatca
tcaggaatccattatggtgtcattacgtgtgaaggctgcaagggctttttcaggagaagt
cagcaaagcaatgccacctactcctgtcctcgtcagaagaactgtttgattgatcgaacc
agtagaaaccgctgccaacactgtcgattgcagaaatgtcttgccgtagggatgtctcga
gacgctgtaaaatttggtcgaatgtcgaaaaaacagagagacagcttgtatgcagaagtg
cagaagcaccggatgcagcagcagcagcgcgaccaccagcagcagcctggagaggctgag
ccgctgacacccacctacaacatctcggccaatgggctgacggagcttcacgaggacctc
agtacctacattgatgggcacacccctgagggcagcaaggccgactccgccgtcagcagc
ttctacctggacatacagccctccccagaccagtcagggcttgatatcaatggaatcaaa
ccagaacccatatgtgactacacaccagcatctggcttctttccctactgttcgttcacc
aatggagagacttccccaacggtgtccatggcagaactagaacaccttgcacagaatata
tctaaatcacatctggaaacctgccaatacttgagagaagaacttcagcagataacgtgg
cagacctttctgcaggaagagattgagaactatcaaaacaagcagcgggaggtgatgtgg
caattgtgtgccatcaaaattacagaagctatacagtatgtggtggagtttgccaaacgc
attgatggatttatggagctgtgtcaaaacgatcaaattgtgcttctaaaagcaggttct
ctagaagtggtgttcatcaggatgtgccgtgcctttgactctcagaacaacaccgtgtac
tttgatgggaagtatgccagccctgatgtcttcaaatccttaggctgtgaagactttatt
agctttgtgtttgaatttggaaagagtttatgttctatgcacctgactgaagatgaaatt
gcattattttctgcatttgtactgatgtcagcagatcgttcatggctacaggaaaaggtc
aaaattgaaaaactgcaacagaaaattcagctagctcttcaacatgttctacagaagaat
caccgagaagatggaatactaacaaagttaatatgcaaggtgtctacgttaagagcctta
tgtggacgacatacagaaaagctaatggcatttaaagcaatatacccagacattgtgcga
cttcattttcctccattatacaaggagttgttcacttcagaatttgagccagcaatgcag
attgatgggtaa
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