Sciurus carolinensis (gray squirrel): 124977805
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Entry
124977805 CDS
T08117
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ncar03016
]
124977805
Enzymes [BR:
ncar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
124977805
Transfer RNA biogenesis [BR:
ncar03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
124977805
Prokaryotic type
tRNA splicing ligases
124977805
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
124977805
NCBI-ProteinID:
XP_047397613
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All DBs
Position
2:complement(59524108..59525657)
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AA seq
505 aa
AA seq
DB search
MSHTYNDELRFLEKIDKNCWRIKKGFVPNMQVEGVFYVNDALEKLIFEELMNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEETLEMGVDWSL
REGYAWAEDKEHCEEYGRMLQTDPNKVSARAKKRGLPQLGTLGAGNYYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLFCARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFTKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTCASPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQSMT
ETFGTTCHGAGRALSRAKSQRNLDFQDVLDKLADMGIAIHVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAIIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacacttataacgatgagctacggttcctggaaaagatcgacaaaaactgctgg
agaatcaaaaagggctttgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gctctggagaaattaatatttgaggaattaatgaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacagattggcaatgtggcagccttgcctggaattgttcat
cgatctattggtcttcctgatgtccattcaggctatgggtttgctattgggaatatggct
gcctttgatatgaatgatcctgaagcagtggtatccccaggtggtgtgggatttgacatc
aactgtggagtgcgcttgctaagaaccaatttggatgagagtgatgtccaacctgtgaag
gagcagcttgcccaagctatgtttgaccacattcctgtcggggtgggatcaaaaggtgtg
atcccaatgaatgccaaagacttggaggagaccttggagatgggtgtggactggtcccta
agggaaggctatgcctgggccgaagacaaggagcactgtgaagagtatggaaggatgctg
caaactgaccccaacaaggtctctgcaagggccaagaaaagaggccttcctcagttgggg
accctaggagcaggtaactactatgcagaaatccaggtggtggatgaaattttcaatgag
tatgctgctaagaaaatgggcatcgaccataaaggacaagtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtagccacagatgcactggtagctatggaaaaagcc
atgaagagagacaagatcatagtcaatgaccgtcagttgttttgtgctcgaatcgcttct
gcagagggtcaggactacctaaagggaatggcagcagctggaaactatgcctgggtcaac
cgctcttctatgaccttcttaacccgtcaggctttcaccaaggtcttcaacacaacccct
gacgacttggacctgcatgtaatctatgatgtttctcacaatattgccaaagtagagcag
catgtggtggacggaaaagaacggacactgttggtgcacaggaagggatccacctgcgct
tccccccctcaccaccccctcattgctgttgattaccaacttaccggacagccagtgctc
attggtggcaccatgggaacctgtagctatgttcttactggcactgaacagagcatgact
gagacctttggaactacctgtcatggagcgggccgtgcattgtcccgagcaaaatctcag
cgtaatttagatttccaggatgttttagacaaattggcagatatgggaattgcaatccat
gttgcctcacccaaattggttatggaagaggctcctgagtcctataagaacgtcacagat
gtggtgaacacctgccatgatgctggaatcagcaagaaggccatcaaactgagaccaatt
gctattatcaaagggtag
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