KEGG   Sciurus carolinensis (gray squirrel): 124977941
Entry
124977941         CDS       T08117                                 
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    124977941
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ncar03400]
    124977941
DNA repair and recombination proteins [BR:ncar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     124977941
SSDB
Motif
Pfam: Tyr-DNA_phospho RMMBL
Other DBs
NCBI-GeneID: 124977941
NCBI-ProteinID: XP_047397842
LinkDB
Position
2:186857750..186939861
AA seq 608 aa
MSQEGSYGRWTISSSDESEDEKPKLDKQSTSSVPCAGQGAANEPRFNCSEARKAAHRRQA
SPVKFSNTDLASPPKKQKSGSQEDLGWCLSSSDDELQPESQKKQPEKVEVKEEKDLSSPK
DGAAQGTGNHGLLASHRHKGEEDEYETSGEGQDIWDMLDKGNPFQFYLTRVSGIKPKYNS
KALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHA
QAKPYEHVSFCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHEDWHQKTQGIWLSP
LYPRIGHGTHRSGESTTHFKADLISYLMAYNAPPLQEWIDTIQEHDLSETNVYLIGSTPG
RFQGSQKDNWGHFRLRKLLKEHASSIPKAEGWPIVGQFSSIGSLGADESKWLCSEFKESL
LALGQDSKIPGKSTIPLHLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHTW
SAETSGRSNAMPHIKTYMRPSPDFSRIAWFLVTSANLSKAAWGALEKNGAQLMIRSYELG
VLFLPSAFGLDSFKVKHKFFSGSQESTPPFPVPYDLPPEPYGNKDRPWIWNIPYINAPDT
HGNMWVPS
NT seq 1827 nt   +upstreamnt  +downstreamnt
atgtcccaggaaggcagttatgggaggtggacaatatccagtagcgatgaaagtgaggat
gagaagcccaaactggacaagcagtcgacatcctctgtcccctgtgctggacagggagca
gccaatgagccacggttcaactgttctgaggctcggaaagctgcacacaggaggcaggca
tcacctgtgaaattcagcaacacagatttggcttcacctcccaaaaagcagaaaagtggt
tcccaggaagacctaggctggtgtctctccagcagtgacgatgaactgcaaccagaatct
cagaagaagcagccagagaaagtggaggtcaaagaggaaaaagacctttcctctcccaaa
gatggtgccgcccagggaactggaaaccatggccttcttgccagccacaggcataaaggg
gaggaagacgagtatgagacatcaggggaaggccaggacatttgggacatgctggacaaa
gggaaccccttccagttctacctcactagagtctcaggaattaagcccaagtacaactcc
aaagccctccacatcaaggatattttgtctcctctatttgggacacttgtttcttcagct
cagttcaactactgcttcgatgtggactggcttgtaaagcagtatccaccagagttcagg
aagaagccaatcctgctcgtgcatggcgataaacgggaagctaaggctcacctccacgcc
caggcgaagccttatgagcacgtttccttctgccaggcaaagttggatattgcatttgga
acacaccacacgaagatgatgctactgctgtacgaagaaggtctccgggtcgtcattcac
acctccaacctcatccatgaagactggcaccagaaaacccaaggaatatggttgagcccc
ctgtacccacgaattggccatggaacacacagatctggagaatcaacaacacattttaaa
gctgatctcatcagttacttgatggcttacaatgctcctcctcttcaggagtggatagac
accatccaggagcatgatctctctgaaacaaatgtttaccttattggttcaaccccagga
cgctttcaaggaagtcagaaggacaattggggacattttaggcttaggaagcttctgaaa
gaacatgcttcatccatcccgaaagccgagggctggcctatagtgggtcagttttcaagc
attggctcgctgggggctgatgaatccaaatggctatgttctgagtttaaagagagcttg
ctggcactggggcaggacagcaaaattccaggaaaaagcaccattcctcttcatttgatc
tatccttctgtggaaaacgttcggaccagcttggaaggataccctgctggaggttctctt
ccctatagcatccagacagctgaaaaacaaaattggcttcattcctacttccacacatgg
tcagcagagacatctggccgcagcaatgccatgcctcatattaagacatacatgaggccc
tctccagacttcagtagaattgcttggtttcttgtcacaagcgccaatctgtccaaggcc
gcctggggagcactagagaagaacggtgcccagctgatgatccgctcctacgagctcggc
gtgcttttcctcccgtcagcatttggcctggacagcttcaaagtgaaacacaaattcttc
tctggcagccaggagtccacaccaccttttcctgtgccatatgatctgcccccagaaccg
tatggaaataaagatcgaccatggatttggaatattccttatatcaacgcaccagataca
catgggaacatgtgggtgccctcctaa

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