Sciurus carolinensis (gray squirrel): 124978041
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Entry
124978041 CDS
T08117
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 7 isoform X1
KO
K14437
chromodomain-helicase-DNA-binding protein 7 [EC:5.6.2.-]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncar03036
]
124978041
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
124978041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_CHD1_Hrp3
HDA2-3
Myb_DNA-bind_7
MUN
Motif
Other DBs
NCBI-GeneID:
124978041
NCBI-ProteinID:
XP_047398016
LinkDB
All DBs
Position
1:complement(73494941..73679791)
Genome browser
AA seq
2996 aa
AA seq
DB search
MADPGMMSLFGEDGNIFSEGLEGLGECGYPENPVNPMGQQMPIDQGFASLQPSLHHPSSN
QNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSNAPGNGLASPHSQYHTPPVPQVPHGGSGG
GQMGVYPGMQNERHGQSFVDSGSMWGPRAVQVPDQIRAPYQQQQPQPQPPQPAPSGPPAQ
GHPQHMQQMGSYMARGDFSMQQHGQPQQRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQ
QSPSMAPSLRHSVQQFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTVP
SPTINNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQG
LMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRPGSAGI
PMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQSRPFMGMSSAPRELTGHMRPNGC
PGVGLADPQAIQERLIPGQQHPGQQPSFQQLPTCPPLQPHPGLHHQSSPPHPHHQPWAQL
HPSPQNTPQKVPVHQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKKKK
KKNNHIVAEDPSKSFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRPKAKKDPKEPKEPK
EKKEPKEPKTPKTPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKKKVNKGKTE
GSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAGR
DSPSNTSQSEQQESVDAEGPVVEKIMSSRCVKKQQESGEEVEVEEFYVKYKNFSYLHCQW
ASVEDLEKDKRIQQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDDRGEP
VTHYLVKWCSLPYEDSTWELRQDIDQAKIEEFEKLMSREPETERVERPPADDWKKSESSR
EYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFL
VIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAI
ITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNT
VEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAP
KEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLING
AEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLD
ILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADT
CIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQ
SMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEEDIDQILLRRTHTITI
ESEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAELDIDALNGRNNLVIDTPRVRK
QTRLYSAVKEDELMEFSDLESDSEEKPCAKPRRPQDKSQGYARSECFRVEKNLLVYGWGR
WTDILSHGRYKRQLTEQDVETICRTILVYCLNHYKGDENIKSFIWDLITPTADGQTRALV
NHSGLSAPVPRGRKGKKVKAQSTQPVVQDADWLASCNPDTLFQEDSYKKHLKHHCNKVLL
RVRMLYYLRQEVIGDQADKILEGADSSEADVWIPEPFHAEVPTDWWDKEADKSLLIGVFK
HGYEKYNSMRADPALCFLERVGMPDAKAIAAEQRGTDMLADGGDGGEFDREDEDPEYKPT
RTPFKDEIDEFANSPEDKEESMEMHTTGKHSESSAELGQLYWPNTSTLTTRLRRLITAYQ
RSYKRQQMRQEALMKTDRRRRRPREEVRALEAEREAIISEKRQKWTRREEADFYRVVSTF
GVIFDPVKQQFDWNQFRAFARLDKKSDESLEKYFSCFVAMCRRVCRMPTKPDDEPPDLAS
LIEPITEERASRTLYRIELLRKIREQVLHHPQLGERLKLCQPSLDLPEWWECGKHDRDLL
VGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNVSSLNALAVGFGQTPPVIPSAH
GHEEKAAEQAEGKVEESENLAAKEKSEGKEEEEEAEGGGKVGAQGCEAEASSVKSELKGA
EVSADPGSKSVSEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTARD
ETRDGFYMEDGDPSVAQLLHERTFAFSFWPKDRVMINRLDNICEAVLKGKWPVNRRQMFD
FQGLIPGYTPTTMDSPLQKRSFAELSMVGQASISGSEDITTSPQLSKEDALNLSVPRQRR
RRRRKIEIEAERAAKRRNLMEMVAQLRESQVVSENGQEKVVDLSKASREATSSTSNFSSL
TSKFILPNVSTPVSDAFKTQMELLQAGLSRTPTRHLLNGSLVDGEPPMKRRRGRRKNVEG
LDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPIRNIPSPGQLDPDTRIPVINLEDGTRLV
GEDAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPNKLDINTL
TGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDWTDIVKQSGFVPESMFD
RLLTGPVVRGEGASRRGRRPKSEIARAAAAAAAVASTSGINPLLVNSLFAGMDLTSLQNL
QNLQSLQLAGLMGFPPGLATAATAGGDAKNPAAVLPLMLPGMAGLPNVFGLGGLLNSPLS
AATGNTTTASSQGEPDDGTSKVEEKGKENEDENKDSEKSTDAVSATDSANGSVGAATAPA
GLPSNPLAFNPFLLSTMAPGLFYPSMFLPPGLGGLTLPGFPALAGLQNAVGSSEEKAADK
AEGGPFKDAENLEGSDAEESLDKTAESSVLEDEIAQGEELDSLDGGDEIENNENDE
NT seq
8991 nt
NT seq
+upstream
nt +downstream
nt
atggcggatccaggaatgatgagtctttttggcgaggatgggaatatcttcagtgaaggc
cttgaaggccttggagaatgtggttaccctgaaaatccagtaaatcccatgggtcagcaa
atgccgatagaccaaggctttgcctctttacagccatcccttcatcatccctccagtaat
caaaatcaaacaaagttgacccatttcgatcactataatcagtatgaacaacagaagatg
catctgatggatcagcctaacagaatgatgagcaatgcccctgggaacggactggcatct
ccgcactcacagtatcacacccctcccgttccccaggtgccccatggtggcagtggtggg
ggtcaaatgggagtctaccctggcatgcagaatgaaaggcacgggcaatcttttgtggac
agtggctccatgtggggcccccgggctgttcaggtaccagatcagatacgagccccctac
cagcagcagcagccacagccacagccaccgcagccagctccgtcggggccaccagcgcag
ggccaccctcagcacatgcaacagatgggcagctatatggcacgtggggatttttccatg
cagcagcatggtcagccacagcagaggatgagccagttttcccaaggtcaagagggcctc
aatcagggaaatcctttcattgccacctcaggacctggccatttgtcccatgtgccccag
cagagtcccagcatggcaccttccttgcgtcactcggtgcagcagttccatcaccacccc
cctactgctctccatggagaatccgttgcccacagtcccagattctccccgaatcctcct
caacaaggggctgttagaccacaaacccttaactttagttctcggagccagacagtcccc
tctcctactataaacaactcagggcagtattctcgatatccttacagtaacctaaatcag
ggattagttaacaatacagggatgaatcaaaatttaggccttacaaataatactccaatg
aatcagtccgtaccaagataccccaatgctgtaggattcccatcaaacagtggtcaagga
ctaatgcaccagcagcccatccaccccagtggctcacttaaccaaatgaacacacaaact
atgcatccttcacagcctcagggaacttatgcctctccacctcccatgtcacccatgaaa
gcaatgagtaacccagcaggcactcctcctccgcaagtcaggcccggaagtgctgggata
ccaatggaagttggcagttatccaaatatgccccaccctcaaccgtctcaccagccccct
ggtgccatgggaattggacagaggaatatgggccccagaaacatgcagcagtctcgtccg
tttatgggcatgtcctcggcaccgagggagttgaccgggcacatgagaccaaatggttgt
cctggtgttggccttgcagatccacaagcaatccaggaacgactgatacctggccaacaa
catcctggtcagcagccgtcttttcagcagttgccaacctgtcctccgctgcagccccac
ccgggcttgcaccaccagtcttcacccccacatcctcatcaccagccttgggcacagctc
cacccatcaccccagaacaccccgcagaaagtgcctgtgcatcagcattctccatcggag
ccctttctagagaaaccagtgccggatatgactcaggttagtgggccgaatgctcagcta
gtgaagagcgatgattacctgccgtccatagaacagcagccacagcagaagaagaagaaa
aagaaaaacaaccacattgttgcagaggatcccagtaaaagttttggtaaagatgacttc
cctggtggggttgataaccaagaactaaataggaactctctggatgggtcccaagaagaa
aaaaagaaaaagaaaaggccgaaggcaaaaaaagacccgaaggaaccgaaagaacccaag
gagaagaaagaacccaaggaacccaagaccccgaaaacccccaagattcccaaagagcca
aaggaaaagaaagcaaaaactgccacgccaaaacccaaatccagcaaaaagtcaagtaat
aagaaacctgattcagaagcaagtgctttgaagaaaaaggtcaacaagggaaaaacagaa
ggttctgaaaattcagacttagacaaaacgcccccaccatctcctcctcctgaagaagac
gaagatccaggtgttcagaagagacggtctagcaggcaggtgaagagaaagcgatacact
gaggacttggagttcaagatttctgacgaggaggcagatgatgcagatgctgctgggaga
gactccccctccaacacttcacagtcagagcagcaggaatctgttgatgcagaaggccca
gtggtagagaaaatcatgagtagtcgttgtgtgaaaaagcagcaggaatctggagaggag
gtagaagttgaggaattttatgtgaaatacaaaaacttctcttatcttcattgtcaatgg
gcatcagtagaagatctggaaaaagataagagaattcagcaaaagattaaacgatttaag
gcaaaacagggccagaacaaattcctttcagagattgaggatgagctttttaatccagat
tatgtggaggttgaccggataatggactttgcacgtagcacagatgaccggggagagcct
gtgactcattatctggtgaagtggtgctcacttccctatgaagacagcacgtgggagctg
aggcaggacatagatcaagcaaagatcgaagagtttgagaaactcatgtccagggagccg
gaaacagagcgtgtggagcgacctcctgctgatgattggaagaaatcagagagttccagg
gagtataaaaacaataacaaactcagggaataccagttggagggagtgaactggctgctt
ttcaattggtacaacatgcgaaactgcattttagcagatgaaatgggtttgggaaaaact
atccagtccattacatttctctatgagatatatttgaaaggaatccatggccctttttta
gtaattgccccattgtccacaatccccaactgggaaagggaattccgaacctggacagag
ttgaacgtggttgtgtatcatgggagtcaagctagtcgtcggaccattcagttgtatgaa
atgtacttcaaagatccccagggtcgcgtgataaaggggtcctataagtttcatgccatc
atcactacatttgagatgattttgactgattgtcccgagctgcggaatattccatggcgc
tgtgtggttatcgatgaagcccacaggctgaagaataggaactgcaagctattggaggga
ctcaagatgatggacttggaacacaaagtgctgctgacggggaccccgctacagaacact
gtggaagagctctttagcttgctgcatttcttggaaccaagtcgcttcccttcagaaacc
acctttatgcaagaattcggtgatctaaaaacagaggaacaggtgcaaaaacttcaggct
attctaaagccaatgatgttgagacgtctcaaagaggatgtagaaaagaacttggccccc
aaagaagaaactattattgaagttgagctaacaaacattcagaagaaatattacagagcc
atccttgagaagaattttacatttctttccaaaggtggtggacaagctaacgtacctaac
cttttaaacactatgatggaattacggaagtgctgcaatcatccgtacctaatcaatggt
gctgaagagaaaattttggaagagtttaaagaaacacacaatgcagagtctccagatttt
cagctccaggcaatgatccaggctgctggcaagctagtactgattgacaagctgctgcca
aaactgaaggctggtggccacagggtgcttatcttttcccagatggtgcgctgcttggac
atactggaagactacctcattcagagacggtacccgtatgaaaggatcgatggccgagta
agaggtaacctccgccaggcagctattgacagattttccaaacctgattccgataggttt
gttttcctcctgtgtacgagagcaggagggctaggcattaatctcactgctgctgatacc
tgcatcatcttcgattcagactggaatccccaaaatgacctccaggctcaggctagatgt
catagaataggacaaagcaaatctgtgaaaatctacagactgattacaagaaattcctat
gaaagggaaatgtttgacaaggctagtttgaagcttggtctggataaagctgttctgcaa
tctatgagtggacgagaaaatgctaccaatggggtacaacagctttcaaagaaagaaata
gaggatcttctacgaaaaggggcttatggtgcactcatggatgaggaagatgaagggtct
aagttctgtgaagaagacatcgatcaaattctccttcggcgaacccacactatcactatt
gagtctgaaggaaaaggttccacatttgctaaggccagttttgttgcatccggaaataga
acagatatttctttggatgatccaaatttctggcaaaagtgggctaagaaggctgaattg
gatattgatgctttaaatgggaggaacaacctggttattgacactccaagagtgagaaaa
cagaccaggctgtacagcgcagtgaaggaggacgaactgatggagttttcagacctggaa
agtgattctgaagaaaagccttgtgcaaaacctcggcggccccaggataagtcacagggt
tacgccaggagtgagtgtttcagagttgagaagaatctgctcgtctatggttggggcaga
tggacagatatcctttctcatggacgctacaaacgtcaactcactgagcaagatgtggaa
accatttgccgaaccatcctggtgtactgtctcaaccattacaaaggggacgagaatatc
aaaagcttcatctgggatctgatcacacccacagctgatggccagactcgagccttggtc
aatcattctggtctctcagccccagtgcccaggggaaggaaggggaagaaggtgaaagcc
cagagcacacagccagtggtacaggatgctgactggctggccagctgcaacccggacaca
ctgttccaggaggacagctacaagaagcacctgaaacaccactgcaacaaggtcctgctg
cgtgtccgcatgctgtactacctaagacaagaagttataggagaccaggcagataagatc
ctagagggtgccgactcaagtgaagcagatgtgtggatccctgaacctttccatgcagaa
gttcctacagattggtgggataaggaagcagataaatccctcttaattggagtgttcaaa
catggctatgagaaatacaattctatgcgagctgaccccgcactgtgctttctggaacga
gttggtatgcccgatgccaaggccattgctgccgagcaaagaggaacagacatgctagca
gatggtggtgatggtggagaatttgatagagaagatgaagacccagaatataaaccaacc
agaacaccattcaaagatgaaatagatgaatttgcaaattctccagaggataaggaagaa
tccatggaaatgcacaccacaggcaagcacagtgagagcagtgctgagttaggccaactt
tactggcctaacacttcaaccctgactacgcgtctgcgccggctcattactgcctatcag
cgcagctataaacggcaacaaatgaggcaagaggccctaatgaagactgaccggcgcaga
cggcggcctcgggaggaagtgagagcgctagaggcggaaagggaagctattatatctgag
aaacggcaaaagtggacgaggagagaagaagctgatttttaccgagtggtatccaccttt
ggggttatttttgaccccgtgaaacagcagtttgactggaaccagtttcgagcctttgcc
aggcttgacaaaaaatccgatgagagtttggagaaatacttcagctgctttgtggccatg
tgtaggcgggtgtgtcgaatgcccacaaagccagacgatgagccacctgaccttgcctcc
ctgattgagcccatcacggaggagcgagcttctagaactctgtaccgcattgagctgctg
cggaagatccgtgagcaggtcctgcatcacccacaactaggggagaggctgaagctctgc
cagcccagcctggatctgcccgagtggtgggagtgtggaaagcatgaccgggacctgctg
gtgggtgctgctaagcatggggtcagtcgcacagactaccacatcctcaacgaccctgag
ctgtccttcttggatgcacataaaaactttgctcaaaaccgaggtgcaggtaatgtctct
tccttgaacgcactggcagtgggctttggccagactcctccagtcatcccatcagctcat
ggtcacgaagaaaaggcagcagagcaggctgaaggcaaagtggaggagtctgaaaacttg
gcagccaaagagaagtcagaggggaaagaagaggaagaagaagccgagggtgggggcaag
gtcggtgcacagggctgtgaggccgaggccagctccgtcaagagtgagctgaaaggggca
gaggtcagcgcagaccctgggtccaagtctgtctcggagaaaggttccgaagaagatgaa
gaagaaaagctggaggacgacgataagtcagaggagtcttcccagcctgaagcaggagct
gtctccagagggaagaattttgatgaagaaagcaatgcttctatgagcactgctagggat
gaaacccgagatggattctacatggaggatggagatccttcagtagctcagctccttcac
gaaagaacatttgccttctcattttggcctaaggatagagtaatgataaaccgattagac
aacatctgtgaagcagtgttgaaaggcaaatggccagtaaataggcgccagatgtttgat
ttccagggcctcatccctggctacacacccaccaccatggacagtcccttgcagaagagg
agctttgctgagctctccatggttgggcaggccagcattagtgggagtgaggatattacc
acttctcctcagttatcaaaggaagatgccctcaacctctcagtccctcgccagcggcgg
cggagaaggagaaaaattgaaattgaggctgaaagagctgccaagaggcgaaatctcatg
gagatggttgcccagctgcgggagtctcaggtggtctcagaaaatggacaagagaaagtt
gtagatttatcaaaggcctcaagagaggcaacaagttctacctcaaatttttcatctctt
acttcaaagtttatcttgcctaatgtctcaacaccagtgtctgatgcctttaagactcaa
atggaactgctccaagcaggcctttcgcgcacacccacaaggcatctgcttaatggctcc
ctagtggatggagagcctcccatgaagaggaggcgggggaggaggaaaaacgtggagggc
cttgatctgcttttcatgagccacaaacggacgtccttgagtgcagaggatgctgaggtg
accaaagcttttgaagaagatatagagactccaccaataagaaacattccttctcccgga
cagctggacccagacacacggatccctgttatcaatctggaagacgggacaaggctggtg
ggggaagatgctcctaaaaataaggatttagttgaatggctaaagctgcaccctacttac
actgttgatatgccaagttacgtaccaaagaatgcagatgtgctgttttcctcgtttcag
aaaccgaaacagaaacgacatcgatgtcgaaatcctaataaattggatataaacactttg
acaggagaagaaagggtgcctgttgtcaataaacgaaatgggaagaagatgggtggagct
atggcacctccaatgaaggatctacccaggtggctggaagaaaatcctgaatttgcagtt
gctccagactggactgatatagttaaacagtctggttttgttcccgagtccatgtttgac
cgtcttctcactggaccagtggtgagaggagaaggagcaagcagaagaggaagaaggccc
aagagcgaaatcgcccgagcagcagcagccgctgctgctgttgcatccacgtcagggatc
aaccctctgttggtgaacagcctgtttgctgggatggacctgacgagcctgcagaacctc
cagaatctccaatctctccagctggcgggtctcatgggcttccctccaggactggcaaca
gctgccaccgccggaggcgacgctaagaaccctgctgccgtgctgcccctgatgctgcca
ggaatggcaggcctgcccaacgtgttcggactgggcgggctgctgaacagccctctctca
gctgctactggaaacaccactactgcttctagtcaaggagaaccggacgatggcacttca
aaagtagaagagaaaggaaaggagaacgaagacgagaacaaagactctgagaaaagcaca
gatgctgtttcagctactgactctgcgaatggatctgttggtgctgctactgccccggct
ggattgccctccaacccgctagccttcaaccctttcctcctgtccaccatggccccaggc
ctcttctacccatccatgtttctacctccaggactggggggattgacgctgcctgggttc
ccagcattggcaggactacagaacgccgtgggttccagtgaagaaaaggctgctgacaag
gccgagggaggcccctttaaggacgcagagaacctcgagggcagtgatgcggaggagagc
ctggacaagactgcggagtcctccgtcttagaagatgagatagcacagggtgaagagcta
gactcacttgatgggggggatgaaatagaaaacaatgaaaatgatgaataa
DBGET
integrated database retrieval system
