Sciurus carolinensis (gray squirrel): 124978052
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Entry
124978052 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear envelope pore membrane protein POM 121C-like
KO
K14316
nuclear pore complex protein Nup121
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03013
Nucleocytoplasmic transport
ncar05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124978052
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
124978052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124978052
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
124978052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POM121
Motif
Other DBs
NCBI-GeneID:
124978052
NCBI-ProteinID:
XP_047398036
LinkDB
All DBs
Position
2:complement(56348482..56352068)
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AA seq
1195 aa
AA seq
DB search
MSPAAAAAGEGQRWRSPIESTQDCRDPARACSRPEGMALRVLALLGLVLYLAPARPLVAW
LAVGATTAWWGLNREPXRPRALQLLARRSSRRQRTLLLSPSAKSAVKRNLQEPRTLLERL
NPTELLLMGCYLGKPGPPQLATAQEGRDLLERPARSSPPAPAAQRIQREHGYPSLPTPFH
RPSRRPAHRDCGTLSNPFIIAPRRYYPIQQAQYSLLGVLPTVCWNGCQKKAVLSARNSKM
VCSPATVRIAPPDSKLTRCPIPERLINSSLPSPSSNVPEPCAKEAVLNALKEGKKRTLEK
EDQVFVDGQENKRSRHDSRSGHSPFVPLVANGVPASFVPNPGSLKRGLTSQSSEDHLSKR
ARTSSVSSLTSTRTGGIRSSNRNAITSSYSSTRGISRQQLWKRSGSISSPFSSPASSRSE
TPERPAKKIRKEEPCQHSSSSTRTPLVSNRESQGERVADTPKQQNSGASPSTPGSSRQRK
RKIPLLPSRRRDQLTLPSPPQLGYSITAEDFDLEKKASLQWINKVLEDKTVVPPNSENPP
TTEPSFTFTLPVVGATSSAVSWPDTGTSPSLENLKKTQSLPGPSLPESSPLKTPDLQASL
GSLPPGPLPGTSSDSKSTTTSVELVPASSTAPVTDTKLPSAPQADTSTKAPGPLTPSPTP
MQGVLFGMSGSETSDPSSPAAPAMSSASPTFKPIFVMASNSKSEVSLPSNLSTTASTFPT
MTSTATSTFKSIFGDLRPPVAVPLPAPFSCKPTTTVTAAAAPAAPLFADLASATSAVAPT
TTASVSTDSASQHAFCFGVNSVASTGSSTTSSMISASLPFPFGGAPGSAASFSRAMGSEF
QFGKPLTMQTSTVATTFGQSLPGAVQTATSKSSSSNSSSSSSSSSTAGFSGFSTSLTTSA
PATTCQPTLTFSNRITPAFNIPFGSSANPSLPAYSAAISQPKFGAANGQQQGSTRKTPTP
NLGSPFTSGNSGAPAPSAAPAPAPAQPASGNSGQSVFGLKTIASTFRAPASTLKAFGAAT
TSGFRGITQTTINGPSSSVFGNSTRSPFMFGGSAAPAVSGGFGLGVAAPDTSSTSRAFGC
GAGQSGTTGTTTPIRGDLNQNALGTPFAFNMAGTSEIKPVFGGTSTTTFGKNTPTTRMGT
AGSSLSFGVSSTPTQGFIGVGSFGSAAPSFSIGSGTKTPGARPRLQARRQHTRKK
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgtctccggcggctgcggcggctggagaaggccagcggtggcggtcgcccatagagagc
acccaggactgcagggacccggctcgagcctgcagccggccagaggggatggctctgcgc
gtcctggcgctgctcggcctcgtgctgtacctggcgcccgctaggccgttggtggcctgg
ttggcggttggggctaccacggcctggtggggactgaaccgcgagcccngacgcccgcgc
gccttgcagttgctggctcgccgcagttcgcggaggcaacggacactgctcctctcgcct
tcggccaagtcggcagtaaagcgaaacctccaagagcctcggaccctgctcgaaagactt
aaccccaccgaactgctcctcatgggctgctacctgggtaagcccggccccccgcagctt
gccaccgcgcaggagggccgggacctgctggagcggcccgcccgctcctcaccgcctgct
cccgcggcccagcgcatccagcgtgagcatggttacccctctctccccacccccttccac
cgaccctccaggaggcctgcgcacagggattgtgggactttatccaatccctttataata
gcccctcgaagatactatccaattcagcaggcccaatattccttgctgggggtactgccc
accgtgtgctggaatggttgtcaaaagaaagctgttctctctgctcggaactcaaagatg
gtgtgtagccctgcgactgtgaggattgcccctccggacagcaagctaactcgttgtcca
ataccagagcggttaatcaactcatcactgccctcaccatcgagcaatgttccagagcca
tgtgcaaaggaggcagtactgaatgctctcaaagaggggaagaaaaggactttagagaaa
gaagaccaagtatttgttgatggccaggagaataagagaagtcgccatgatagcaggagt
ggacattcaccatttgtgcccctagtggccaatggagtccctgcttcttttgtgcctaac
cctgggtctctgaaaagaggtctcacttctcagagctcagaggaccacttgagtaagcga
gcacgcacctcttctgtgagttccctgacaagcacgcgcacaggtggcatccgtagctcc
aaccgcaatgcgattaccagttcttacagttcaacccgaggcatctctcggcagcagctg
tggaagaggagtggttccatttcatcccccttctctagcccagcttcctcccgctccgag
acaccggagaggccagccaagaaaatcagaaaagaggagccatgtcagcattccagttcc
tcgactcggactccgctggtgtctaacagggagtctcagggagagagggttgcggacact
ccgaagcagcagaactccggggcttcaccatctacacctggcagctccagacagcggaaa
cggaagatcccattgctgccctccaggcgaagggaccaactgaccttgccttcaccacct
cagcttggttattccatcactgctgaggactttgacctggagaagaaagcttcgctccag
tggatcaacaaggtcttagaggacaagactgttgttcctccaaacagtgagaacccacca
actactgagccttctttcactttcactctgcctgttgtgggtgccacttcttcagcagtc
tcctggccagacacaggcaccagcccatcattagagaacctgaagaagacacagagtctc
ccaggtccatcactcccagaatcttcacctctgaagacacccgaccttcaggcctctctt
ggctctttaccaccagggcccctgccaggtacctcttcagactcaaaatccacaaccact
tctgtggagctggtccctgcttcctccacagcaccggtcactgacaccaagttaccttca
gcccctcaggctgacacgtctaccaaagccccaggcccgcttaccccctcccccaccccc
atgcaaggtgtgttatttggcatgtcaggcagcgagacctctgacccttcctccccagct
gccccagccatgtcttccgcgtctcctacattcaagcccatttttgtgatggcatctaac
agcaagagtgaagtttccttgccatccaacctctccaccacagcctccaccttccccaca
atgaccagcactgctacctcaacttttaagtccatctttggtgacctaaggccacctgta
gctgtgcccttgcctgctcccttttcctgtaagccaacaactactgtgactgctgctgca
gccccagctgcccctctgtttgctgacctggcctctgccacctctgctgtggctcccacc
accaccgccagtgtgtccacagactctgcttcccaacatgctttttgctttggggtcaac
agtgtggccagtactgggagcagcacaactagcagcatgatttctgcttcactgcccttc
ccatttgggggggctcctggttctgctgccagcttttccagggccatgggctctgaattc
cagtttggcaagcccctcaccatgcagacatccacagtggccaccacctttggccagtcc
ctgcctggtgctgttcagacagccaccagcaaaagcagcagcagcaacagcagcagcagc
agcagcagcagcagcactgctggcttcagtggcttcagcacctcccttacaacctcagct
cctgccaccacctgccagcccacactgactttcagtaacaggatcacccctgcattcaat
attccctttggctcaagtgccaacccctccctcccagcatactcagcagccatctcccag
cccaaatttggggctgccaatgggcagcagcaggggtccaccaggaaaacccctacccca
aatcttggcagccctttcacttctgggaactcaggggcccctgccccatctgcagcgcca
gcaccagcgccagcccagccagcctctggcaactcagggcagtcagtttttggtttgaaa
accatagcctcaaccttcagagcccctgccagcacactgaaagcctttggtgcagctacc
acctctggcttcagaggtatcacccagaccaccatcaatgggcccagtagctcagtgttt
ggcaactcaactcggtcccctttcatgtttgggggatctgcagccccagctgtcagtggg
ggctttgggcttggtgtggctgccccagacaccagctccacctctagggcattcggttgt
ggagctggacagagtggtaccacaggtaccaccacccccattcggggggacttaaaccag
aatgccctgggaacaccctttgccttcaacatggccggcacatctgagatcaaacctgtg
tttggaggcacctccacaactacgtttgggaagaacaccccaaccacccgaatgggcaca
gccggcagcagcctctcctttggggtgtcctcgacacccactcaaggcttcattggagtc
gggtctttcggatcagcagccccttcattttccattggttcaggaaccaagaccccaggg
gctagaccgagactgcaggcccgaaggcagcacactcgtaagaaatag
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