Sciurus carolinensis (gray squirrel): 124978120
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Entry
124978120 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: pinin-like
KO
K13114
pinin
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03013
Nucleocytoplasmic transport
ncar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124978120
03015 mRNA surveillance pathway
124978120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124978120
03041 Spliceosome [BR:
ncar03041
]
124978120
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124978120
Spliceosome [BR:
ncar03041
]
Complex C
Other components
EJC/TREX
124978120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
124978120
NCBI-ProteinID:
XP_047398163
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All DBs
Position
2:140361570..140369693
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AA seq
764 aa
AA seq
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MAVAVRTLQEQLEKAKESLKNVDENIRKLTGRDPNDVRPIQARLLALSGPGGGRGRGSLL
LRRGFSDSGGGPPAKQRDLEGAVSRYAGRERRTRRESRQESDPEDDDVKKPALQSSVVAT
SKERTRRDLIQDQNMDEKGSKRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEV
QAEKEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTK
PHLFYIPGRMCPATQKLVEESQRKMNALFEGRRIEFAEQINKMEARPRRQSMKEKEHQVV
RNEEQKAEQEEGKVAQREEELEETGNQHNDVEIEEAGEEEEKEVGIVHSDAEKEQEEEEQ
KQEMEVKMEEETEVRESEKQQDSQPEEVMDVLEMVENVKNVIAEQEVMETNQVESIEPSE
NETSKELEPEMEFDVEPDKECXSLSPGKENVSALEMEKESEEKEEKESEPQPEPVAQPQS
QPQPQSQLQPQPQSQSQPQPQPQPQPQPQPSSSPSPNPPPPQPQPQPQPQPQPQPQSQPV
LQPQPLSQPEDFAISCLQPPPQVIQEQGNLLPERKEFSLETVKLTEVPVEPILTAHSESX
SKTKTRSRSRGRARNKTSKSRSRSSSSSSTSSSSTSSSSGSSSSSGSSSSRSSSSSSSST
SGSSSRDSSSSTTSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHNXFKGGSSR
DAKGSKDKNSRSDRKRSISESSRSGKRSSRSERDRKSDRKDKRR
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgcagtgagaactttgcaggaacagctagaaaaggccaaagagagcctaaag
aatgtggatgagaatattcgcaagctcaccgggagagatccgaatgacgtgaggcccatc
caagccagattgctggccctttctggtcctggtggaggtagaggacgtggtagtttattg
ctgaggcgtggattctcagatagtggaggaggacccccagccaaacagagagaccttgaa
ggggcagtcagtaggtatgctgggcgggagcgacggacaagaagagaatcacgccaagaa
agtgacccagaggatgatgatgttaaaaagccagcgctgcagtcttcggttgtagctacc
tccaaagagcgcacgcgtcgagaccttatccaggatcaaaatatggatgaaaagggaagc
aaaaggaaccgacgaatatttggcttgttgatgggcacccttcaaaaatttaaacaagag
tccactgttgctactgaaaggcaaaaaagacgtcaggaaattgaacaaaaacttgaagtt
caagccgaaaaagaagagagaaagcaagttgaaaatgagagaagagaactatttgaagag
agacgtgctaaacagacagaattgcgacttttggaacagaaggttgagcttgcgcagctg
caagaagagtggaatgagcataatgccaagataattaaatacataagaactaagacaaag
ccccatttattctatatacctggaagaatgtgtccagctacccaaaaactagtagaagaa
tcacagagaaaaatgaatgctttatttgaaggtagacgcatcgaatttgcagaacaaata
aataaaatggaggctaggcctagaagacaatcaatgaaggaaaaagagcatcaggtggtg
cgtaatgaagaacagaaggcggaacaagaagagggtaaggtggctcagcgagaggaagag
ttggaggagacaggtaatcagcacaatgatgtagaaatagaggaagcaggagaggaagag
gaaaaggaagtaggtatagttcatagcgatgcagagaaagagcaggaggaagaggaacaa
aaacaggaaatggaggttaaaatggaggaggaaactgaggtaagggaaagcgagaagcag
caagatagtcagcctgaagaagttatggatgtgctagagatggttgagaatgtcaaaaat
gtaattgctgagcaggaagtaatggaaactaatcaagttgaaagtatagagccttcagaa
aatgaaactagcaaagaattggagccagagatggaatttgacgttgagccagataaagaa
tgtnaatctctgtctcctggaaaagagaatgttagtgctctagaaatggaaaaggaatct
gaggaaaaagaagaaaaagaatctgagccccaacctgagcctgtggctcaacctcaatct
cagccccagccccagtcccaactccaaccccagccccaatcccagtctcaacctcagcct
cagccccagccccagcctcaaccccagcccagctccagccccagtcccaacccaccccca
ccccaaccccaaccccaacctcaacctcaacctcaacctcaacctcagtcccaaccagta
cttcaaccccagcctctctctcagcctgaggactttgccattagctgtttacagccacca
cctcaggttattcaggagcaagggaatttactacctgagcggaaggagttttctttagag
actgtcaaactcactgaggttccagtagagccaatcttgacagcacattcagaaagcnaa
agcaaaaccaaaactagaagcagaagtagaggtcgagctagaaataaaacaagcaagagt
agaagtcgaagcagcagcagtagtagtactagtagcagttcaaccagtagcagcagtgga
agcagttccagcagtggcagtagcagtagtcgaagcagttccagtagtagctccagtaca
agtggtagcagcagcagagatagcagcagcagcactactagtagtagtgagagtagaagt
cgaagtaggggccgggggcataatagagatagaaagcacagaaggagcgtggatcggaag
cgaagggatacttcaggactagagagaagtcacaatnncttcaaaggtggtagtagtaga
gatgcaaaaggatcaaaggataagaattcccggtccgacagaaagaggtctatatcagag
agtagtcgatcaggcaaaagatcttcaagaagtgaaagagaccgaaaatcagacaggaaa
gacaaaaggcgttaa
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