KEGG   Sciurus carolinensis (gray squirrel): 124978120
Entry
124978120         CDS       T08117                                 
Name
(RefSeq) LOW QUALITY PROTEIN: pinin-like
  KO
K13114  pinin
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03013  Nucleocytoplasmic transport
ncar03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    124978120
   03015 mRNA surveillance pathway
    124978120
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncar03019]
    124978120
   03041 Spliceosome [BR:ncar03041]
    124978120
Messenger RNA biogenesis [BR:ncar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     124978120
Spliceosome [BR:ncar03041]
 Complex C
  Other components
   EJC/TREX
    124978120
SSDB
Motif
Pfam: Pinin_SDK_N Pinin_SDK_memA
Other DBs
NCBI-GeneID: 124978120
NCBI-ProteinID: XP_047398163
LinkDB
Position
2:140361570..140369693
AA seq 764 aa
MAVAVRTLQEQLEKAKESLKNVDENIRKLTGRDPNDVRPIQARLLALSGPGGGRGRGSLL
LRRGFSDSGGGPPAKQRDLEGAVSRYAGRERRTRRESRQESDPEDDDVKKPALQSSVVAT
SKERTRRDLIQDQNMDEKGSKRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEV
QAEKEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTK
PHLFYIPGRMCPATQKLVEESQRKMNALFEGRRIEFAEQINKMEARPRRQSMKEKEHQVV
RNEEQKAEQEEGKVAQREEELEETGNQHNDVEIEEAGEEEEKEVGIVHSDAEKEQEEEEQ
KQEMEVKMEEETEVRESEKQQDSQPEEVMDVLEMVENVKNVIAEQEVMETNQVESIEPSE
NETSKELEPEMEFDVEPDKECXSLSPGKENVSALEMEKESEEKEEKESEPQPEPVAQPQS
QPQPQSQLQPQPQSQSQPQPQPQPQPQPQPSSSPSPNPPPPQPQPQPQPQPQPQPQSQPV
LQPQPLSQPEDFAISCLQPPPQVIQEQGNLLPERKEFSLETVKLTEVPVEPILTAHSESX
SKTKTRSRSRGRARNKTSKSRSRSSSSSSTSSSSTSSSSGSSSSSGSSSSRSSSSSSSST
SGSSSRDSSSSTTSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHNXFKGGSSR
DAKGSKDKNSRSDRKRSISESSRSGKRSSRSERDRKSDRKDKRR
NT seq 2295 nt   +upstreamnt  +downstreamnt
atggcggtcgcagtgagaactttgcaggaacagctagaaaaggccaaagagagcctaaag
aatgtggatgagaatattcgcaagctcaccgggagagatccgaatgacgtgaggcccatc
caagccagattgctggccctttctggtcctggtggaggtagaggacgtggtagtttattg
ctgaggcgtggattctcagatagtggaggaggacccccagccaaacagagagaccttgaa
ggggcagtcagtaggtatgctgggcgggagcgacggacaagaagagaatcacgccaagaa
agtgacccagaggatgatgatgttaaaaagccagcgctgcagtcttcggttgtagctacc
tccaaagagcgcacgcgtcgagaccttatccaggatcaaaatatggatgaaaagggaagc
aaaaggaaccgacgaatatttggcttgttgatgggcacccttcaaaaatttaaacaagag
tccactgttgctactgaaaggcaaaaaagacgtcaggaaattgaacaaaaacttgaagtt
caagccgaaaaagaagagagaaagcaagttgaaaatgagagaagagaactatttgaagag
agacgtgctaaacagacagaattgcgacttttggaacagaaggttgagcttgcgcagctg
caagaagagtggaatgagcataatgccaagataattaaatacataagaactaagacaaag
ccccatttattctatatacctggaagaatgtgtccagctacccaaaaactagtagaagaa
tcacagagaaaaatgaatgctttatttgaaggtagacgcatcgaatttgcagaacaaata
aataaaatggaggctaggcctagaagacaatcaatgaaggaaaaagagcatcaggtggtg
cgtaatgaagaacagaaggcggaacaagaagagggtaaggtggctcagcgagaggaagag
ttggaggagacaggtaatcagcacaatgatgtagaaatagaggaagcaggagaggaagag
gaaaaggaagtaggtatagttcatagcgatgcagagaaagagcaggaggaagaggaacaa
aaacaggaaatggaggttaaaatggaggaggaaactgaggtaagggaaagcgagaagcag
caagatagtcagcctgaagaagttatggatgtgctagagatggttgagaatgtcaaaaat
gtaattgctgagcaggaagtaatggaaactaatcaagttgaaagtatagagccttcagaa
aatgaaactagcaaagaattggagccagagatggaatttgacgttgagccagataaagaa
tgtnaatctctgtctcctggaaaagagaatgttagtgctctagaaatggaaaaggaatct
gaggaaaaagaagaaaaagaatctgagccccaacctgagcctgtggctcaacctcaatct
cagccccagccccagtcccaactccaaccccagccccaatcccagtctcaacctcagcct
cagccccagccccagcctcaaccccagcccagctccagccccagtcccaacccaccccca
ccccaaccccaaccccaacctcaacctcaacctcaacctcaacctcagtcccaaccagta
cttcaaccccagcctctctctcagcctgaggactttgccattagctgtttacagccacca
cctcaggttattcaggagcaagggaatttactacctgagcggaaggagttttctttagag
actgtcaaactcactgaggttccagtagagccaatcttgacagcacattcagaaagcnaa
agcaaaaccaaaactagaagcagaagtagaggtcgagctagaaataaaacaagcaagagt
agaagtcgaagcagcagcagtagtagtactagtagcagttcaaccagtagcagcagtgga
agcagttccagcagtggcagtagcagtagtcgaagcagttccagtagtagctccagtaca
agtggtagcagcagcagagatagcagcagcagcactactagtagtagtgagagtagaagt
cgaagtaggggccgggggcataatagagatagaaagcacagaaggagcgtggatcggaag
cgaagggatacttcaggactagagagaagtcacaatnncttcaaaggtggtagtagtaga
gatgcaaaaggatcaaaggataagaattcccggtccgacagaaagaggtctatatcagag
agtagtcgatcaggcaaaagatcttcaagaagtgaaagagaccgaaaatcagacaggaaa
gacaaaaggcgttaa

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